Prof. Dr. Torsten Schwede

Biozentrum
University of Basel
Klingelbergstrasse 50 / 70
CH - 4056 Basel
KLB61, Room 1105 Phone: +41 61 207 15 81
Email: torsten.schwede-at-unibas.ch
Curriculum Vitae

Administrative Assistant

Yvonne Steger
KLB61, Room 916
Phone: +41 61 207 15 86
Fax: +41 61 207 15 85
Email: yvonne.steger-at-unibas.ch

Research group Torsten Schwede

Articles

2017
Sprecher, Kathrin S; Hug, Isabelle; Nesper, Jutta; Potthoff, Eva; Mahi, Mohamed-Ali; Sangermani, Matteo; Kaever, Volkhard; Schwede, Torsten; Vorholt, Julia; Jenal, Urs (2017). Cohesive Properties of the Caulobacter crescentus Holdfast Adhesin Are Regulated by a Novel c-di-GMP Effector Protein. mBio, 8(2), e00294-17.
Romano, Valentina; de Beer, Tjaart A P; Schwede, Torsten (2017). A computational protocol to evaluate the effects of protein mutants in the kinase gatekeeper position on the binding of ATP substrate analogues. BMC research notes, 10(1), 104.
2016
Bienert, Stefan; Waterhouse, Andrew; de Beer, Tjaart A P; Tauriello, Gerardo; Studer, Gabriel; Bordoli, Lorenza; Schwede, Torsten (2016). The SWISS-MODEL Repository-new features and functionality. Nucleic acids research, 45(D1), D313-D319.
Nicolet, Stefan; Goldenberger, Daniel; Schwede, Torsten; Page, Malcolm; Creus, Marc (2016). Plasmid-mediated colistin resistance in a patient infected with Klebsiella pneumoniae. The Lancet. Infectious diseases, 16(9), 998-9.
Auffray, Charles; Balling, Rudi; Barroso, Inês; Bencze, László; Benson, Mikael; Bergeron, Jay; Bernal-Delgado, Enrique; Blomberg, Niklas; Bock, Christoph; Conesa, Ana; Del Signore, Susanna; Delogne, Christophe; Devilee, Peter; Di Meglio, Alberto; Eijkemans, Marinus; Flicek, Paul; Graf, Norbert; Grimm, Vera; Guchelaar, Henk-Jan; Guo, Yi-Ke; Gut, Ivo Glynne; Hanbury, Allan; Hanif, Shahid; Hilgers, Ralf-Dieter; Honrado, Ángel; Hose, D Rod; Houwing-Duistermaat, Jeanine; Hubbard, Tim; Janacek, Sophie Helen; Karanikas, Haralampos; Kievits, Tim; Kohler, Manfred; Kremer, Andreas; Lanfear, Jerry; Lengauer, Thomas; Maes, Edith; Meert, Theo; Müller, Werner; Nickel, Dörthe; Oledzki, Peter; Pedersen, Bertrand; Petkovic, Milan; Pliakos, Konstantinos; Rattray, Magnus; I Màs, Josep Redón; Schneider, Reinhard; Sengstag, Thierry; Serra-Picamal, Xavier; Spek, Wouter; Vaas, Lea A I; van Batenburg, Okker; Vandelaer, Marc; Varnai, Peter; Villoslada, Pablo; Vizcaíno, Juan Antonio; Wubbe, John Peter Mary; Zanetti, Gianluigi (2016). Making sense of big data in health research: Towards an EU action plan. Genome medicine, 8(1), 71.
Moult, John; Fidelis, Krzysztof; Kryshtafovych, Andriy; Schwede, Torsten; Tramontano, Anna (2016). Critical assessment of methods of protein structure prediction: Progress and new directions in round XI. Proteins, 84 Suppl 1, 4-14.
Swiss Institute of Bioinformatics Members, SIB (2016). The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. Nucleic acids research, 44(D1), D27-D37.
Kryshtafovych, Andriy; Moult, John; Baslé, Arnaud; Burgin, Alex; Craig, Timothy K; Edwards, Robert A; Fass, Deborah; Hartmann, Marcus D; Korycinski, Mateusz; Lewis, Richard J; Lorimer, Donald; Lupas, Andrei N; Newman, Janet; Peat, Thomas S; Piepenbrink, Kurt H; Prahlad, Janani; van Raaij, Mark J; Rohwer, Forest; Segall, Anca M; Seguritan, Victor; Sundberg, Eric J; Singh, Abhimanyu K; Wilson, Mark A; Schwede, Torsten (2016). Some of the most interesting CASP11 targets through the eyes of their authors. Proteins, 84 Suppl 1, 34-50.
Kryshtafovych, Andriy; Barbato, Alessandro; Monastyrskyy, Bohdan; Fidelis, Krzysztof; Schwede, Torsten; Tramontano, Anna (2016). Methods of model accuracy estimation can help selecting the best models from decoy sets: Assessment of model accuracy estimations in CASP11. Proteins, 84 Suppl 1, 349-69.
2015
Sali, Andrej; Berman, Helen M; Schwede, Torsten; Trewhella, Jill; Kleywegt, Gerard; Burley, Stephen K; Markley, John; Nakamura, Haruki; Adams, Paul; Bonvin, Alexandre M J J; Chiu, Wah; Peraro, Matteo Dal; Di Maio, Frank; Ferrin, Thomas E; Grünewald, Kay; Gutmanas, Aleksandras; Henderson, Richard; Hummer, Gerhard; Iwasaki, Kenji; Johnson, Graham; Lawson, Catherine L; Meiler, Jens; Marti-Renom, Marc A; Montelione, Gaetano T; Nilges, Michael; Nussinov, Ruth; Patwardhan, Ardan; Rappsilber, Juri; Read, Randy J; Saibil, Helen; Schröder, Gunnar F; Schwieters, Charles D; Seidel, Claus A M; Svergun, Dmitri; Topf, Maya; Ulrich, Eldon L; Velankar, Sameer; Westbrook, John D (2015). Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure: with folding and design, 23(7), 1156-67.
Ihssen, Julian; Haas, Jürgen; Kowarik, Michael; Wiesli, Luzia; Wacker, Michael; Schwede, Torsten; Thöny-Meyer, Linda (2015). Increased efficiency of Campylobacter jejuni N-oligosaccharyltransferase PglB by structure-guided engineering. Open biology, 5(4), 140227.
Berman, Helen M; Gabanyi, Margaret J; Groom, Colin R; Johnson, John E; Murshudov, Garib N; Nicholls, Robert A; Reddy, Vijay; Schwede, Torsten; Zimmerman, Matthew D; Westbrook, John; Minor, Wladek (2015). Data to knowledge: how to get meaning from your result. IUCrJ, 2(Pt 1), 45-58.
2014
Schmidt, Tobias B.; Schwede, Torsten; Meuwly, Markus (2014). Computational Analysis of Methyltransfer Reactions in Dengue Virus Methyltransferase. The Journal of Physical Chemistry B, 118(22), 5882-5890.
Stockinger, Heinz; Altenhoff, Adrian M; Arnold, Konstantin; Bairoch, Amos; Bastian, Frederic; Bergmann, Sven; Bougueleret, Lydie; Bucher, Philipp; Delorenzi, Mauro; Lane, Lydie; Le Mercier, Philippe; Lisacek, Frédérique; Michielin, Olivier; Palagi, Patricia M; Rougemont, Jacques; Schwede, Torsten; von Mering, Christian; van Nimwegen, Erik; Walther, Daniel; Xenarios, Ioannis; Zavolan, Mihaela; Zdobnov, Evgeny M; Zoete, Vincent; Appel, Ron D (2014). Fifteen years SIB Swiss Institute of Bioinformatics : life science databases, tools and support. Nucleic acids research, 42(Web Server issue), W436-41.
Biasini, Marco; Bienert, Stefan; Waterhouse, Andrew; Arnold, Konstantin; Studer, Gabriel; Schmidt, Tobias; Kiefer, Florian; Cassarino, Tiziano Gallo; Bertoni, Martino; Bordoli, Lorenza; Schwede, Torsten (2014). SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information. Nucleic acids research, 42(Web Server issue), W252-8.
Moult, John; Fidelis, Krzysztof; Kryshtafovych, Andriy; Schwede, Torsten; Tramontano, Anna (2014). Critical assessment of methods of protein structure prediction (CASP) - round X. Proteins, 82 Suppl 2(S2), 1-6.
Kryshtafovych, Andriy; Moult, John; Bales, Patrick; Bazan, J. Fernando; Biasini, Marco; Burgin, Alex; Chen, Chen; Cochran, Frank V.; Craig, Timothy K.; Das, Rhiju; Fass, Deborah; Garcia-Doval, Carmela; Herzberg, Osnat; Lorimer, Donald; Luecke, Hartmut; Ma, Xiaolei; Nelson, Daniel C.; van Raaij, Mark J.; Rohwer, Forest; Segall, Anca; Seguritan, Victor; Zeth, Kornelius; Schwede, Torsten (2014). Challenging the state-of-the-art in protein structure prediction : highlights of experimental target structures for the 10(th) Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10. Proteins, 82(S2), 26-42.
Schmidt, Tobias; Bergner, Andreas; Schwede, Torsten (2014). Modelling three-dimensional protein structures for applications in drug design. Drug discovery today, 19(7), 890-7.
Uda, Narasimha Rao; Upert, Grégory; Angelici, Gaetano; Nicolet, Stefan; Schmidt, Tobias; Schwede, Torsten; Creus, Marc (2014). Zinc-selective inhibition of the promiscuous bacterial amide-hydrolase DapE : implications of metal heterogeneity for evolution and antibiotic drug design. Metallomics, 6(1), 88-95.
Kryshtafovych, Andriy; Barbato, Alessandro; Fidelis, Krzysztof; Monastyrskyy, Bohdan; Schwede, Torsten; Tramontano, Anna (2014). Assessment of the assessment : evaluation of the model quality estimates in CASP10. Proteins, 82 Suppl 2(S2), 112-26.
Haas, Jürgen; Schwede, Torsten (2014). Unabhängige Validierung von Methoden zur Proteinstrukturvorhersage. Biospektrum, 20(2), 236-237.
Studer, Gabriel; Biasini, Marco; Schwede, Torsten (2014). Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane). Bioinformatics, 30(17), i505-11.
Gallo Cassarino, Tiziano; Bordoli, Lorenza; Schwede, Torsten (2014). Assessment of ligand binding site predictions in CASP10. Proteins, 82 Suppl 2(S2), 154-63.
2013
Schwede, Torsten (2013). Protein modeling: what happened to the "protein structure gap"?. Structure: with folding and design, 21(9), 1531-1540.
Mariani, Valerio; Biasini, Marco; Barbato, Alessandro; Schwede, Torsten (2013). lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests. Bioinformatics, 29(21), 2722-8.
Biasini, M; Schmidt, T; Bienert, S; Mariani, V; Studer, G; Haas, J; Johner, N; Schenk, A D; Philippsen, A; Schwede, T (2013). OpenStructure : an integrated software framework for computational structural biology. Acta crystallographica. Section D, Biological crystallography, 69(Pt 5), 701-9.
Schwede, Torsten: Art. "Homology Modeling of Protein Structures", in: Encyclopedia of Biophysics, Berlin 2013, S. S. 992-998.
Trewhella, Jill; Hendrickson, Wayne A; Kleywegt, Gerard J; Sali, Andrej; Sato, Mamoru; Schwede, Torsten; Svergun, Dmitri I; Tainer, John A; Westbrook, John; Berman, Helen M (2013). Report of the wwPDB Small-Angle Scattering Task Force : data requirements for biomolecular modeling and the PDB. Structure: with folding and design, 21(6), 875-81.
Haas, Juergen; Roth, Steven; Arnold, Konstantin; Kiefer, Florian; Schmidt, Tobias; Bordoli, Lorenza; Schwede, Torsten (2013). The Protein Model Portal: a comprehensive resource for protein structure and model information. Database, 2013, bat031.
2012
Schwede, Torsten; Iber, Dagmar (2012). ECCB 2012 : The 11th European Conference on Computational Biology. Bioinformatics, 28(18), i303-i305.
Barbato, Alessandro; Benkert, Pascal; Schwede, Torsten; Tramontano, Anna; Kosinski, Jan (2012). Improving your target-template alignment with MODalign. Bioinformatics, 28(7), 1038-9.
Bordoli, Lorenza; Schwede, Torsten: Automated Protein Structure Modeling with SWISS-MODEL Workspace and the Protein Model Portal, in: Orry, Andrew JW; Abagyan, Ruben (Ed.). (2012). Homology Modeling: Methods and Protocols, New York, USA: Humana Press (= Vol. 857), S. S. 107-36.
2011
Kryshtafovych, Andriy; Moult, John; Bartual, Sergio G; Bazan, J Fernando; Berman, Helen; Casteel, Darren E; Christodoulou, Evangelos; Everett, John K; Hausmann, Jens; Heidebrecht, Tatjana; Hills, Tanya; Hui, Raymond; Hunt, John F; Seetharaman, Jayaraman; Joachimiak, Andrzej; Kennedy, Michael A; Kim, Choel; Lingel, Andreas; Michalska, Karolina; Montelione, Gaetano T; Otero, José M; Perrakis, Anastassis; Pizarro, Juan C; van Raaij, Mark J; Ramelot, Theresa A; Rousseau, Francois; Tong, Liang; Wernimont, Amy K; Young, Jasmine; Schwede, Torsten (2011). Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction. Proteins, 79(S10), 6-20.
Mariani, Valerio; Kiefer, Florian; Schmidt, Tobias; Haas, Juergen; Schwede, Torsten (2011). Assessment of template based protein structure predictions in CASP9. Proteins, 79 Suppl 10(S10), 37-58.
Kinch, Lisa N.; Shi, Shuoyong; Cheng, Hua; Cong, Qian; Pei, Jimin; Mariani, Valerio; Schwede, Torsten; Grishin, Nick V. (2011). CASP9 target classification. Proteins, 79(s10), 21-36.
Schmidt, Tobias; Haas, Jürgen; Gallo Cassarino, Tiziano; Schwede, Torsten (2011). Assessment of ligand-binding residue predictions in CASP9. Proteins, 79 Suppl 10(S10), 126-36.
Gabanyi, Margaret J; Adams, Paul D; Arnold, Konstantin; Bordoli, Lorenza; Carter, Lester G; Flippen-Andersen, Judith; Gifford, Lida; Haas, Juergen; Kouranov, Andrei; McLaughlin, William A; Micallef, David I; Minor, Wladek; Shah, Raship; Schwede, Torsten; Tao, Yi-Ping; Westbrook, John D; Zimmerman, Matthew; Berman, Helen M (2011). The Structural Biology Knowledgebase : a portal to protein structures, sequences, functions, and methods. Journal of structural and functional genomics, 12(2), 45-54.
Baud, Olivia; Etter, Sylvain; Spreafico, Morena; Bordoli, Lorenza; Schwede, Torsten; Vogel, Horst; Pick, Horst (2011). The Mouse Eugenol Odorant Receptor : Structural and Functional Plasticity of a Broadly Tuned Odorant Binding Pocket. Biochemistry, 50(5), 843-53.
Benkert, Pascal; Biasini, Marco; Schwede, Torsten (2011). Toward the estimation of the absolute quality of individual protein structure models. Bioinformatics, 27(3), 343-50.
2010
Biasini, Marco; Mariani, Valerio; Haas, Jürgen; Scheuber, Stefan; Schenk, Andreas D; Schwede, Torsten; Philippsen, Ansgar (2010). OpenStructur : a flexible software framework for computational structural biology. Bioinformatics, 26(20), 2626-8.
Podvinec, Michael; Lim, Siew Pheng; Schmidt, Tobias; Scarsi, Marco; Wen, Daying; Sonntag, Louis-Sebastian; Sanschagrin, Paul; Shenkin, Peter S; Schwede, Torsten (2010). Novel Inhibitors of Dengue Virus Methyltransferase : discovery by in vitro-driven virtual screening on a Desktop Computer Grid. Journal of Medicinal Chemistry, 53(4), 1483-95.
Haas, J.; Schwede, T. (2010). Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing. ERCIM News, 82, 20-21.
2009
Duerig, Anna; Abel, Sören; Folcher, Marc; Nicollier, Micael; Schwede, Torsten; Amiot, Nicolas; Giese, Bernd; Jenal, Urs (2009). Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. Genes & development, 23(1), 93-104.
Pick, Horst; Etter, Sylvain; Baud, Olivia; Schmauder, Ralf; Bordoli, Lorenza; Schwede, Torsten; Vogel, Horst (2009). Dual activities of odorants on olfactory and nuclear hormone receptors. Journal of biological chemistry, 284(44), 30547-55.
Benkert, Pascal; Tosatto, Silvio C E; Schwede, Torsten (2009). Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust. Proteins, 77 Suppl 9(S9), 173-80.
Benkert, Pascal; Schwede, Torsten; Tosatto, Silvio Ce (2009). QMEANclust : estimation of protein model quality by combining a composite scoring function with structural density information. BMC Structural Biology, 9(1), 35.
Guex, Nicolas; Peitsch, Manuel C; Schwede, Torsten (2009). Automated comparative protein structure modeling with Swiss-model and Swiss-PdbViewer : a historical perspective. Electrophoresis, 30 Suppl 1(S1), S162-73.
Benkert, Pascal; Künzli, Michael; Schwede, Torsten (2009). QMEAN server for protein model quality estimation. Nucleic acids research, 37(Web Server issue), W510-4.
Schwede, T.; Peitsch, M. C.: Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics, in: Appel, RD; Feytmans, E. (Ed.). (2009). Bioinformatics. A Swiss Perspective, New Jersey: World Scientific , S. S. 219-246.
Arnold, Konstantin; Kiefer, Florian; Kopp, Jurgen; Battey, James N. D.; Podvinec, Michael; Westbrook, John D.; Berman, Helen M.; Bordoli, Lorenza; Schwede, Torsten (2009). The protein model portal. Journal of structural and functional genomics, 10(1), 1-8.
Bordoli, Lorenza; Kiefer, Florian; Arnold, Konstantin; Benkert, Pascal; Battey, James; Schwede, Torsten (2009). Protein structure homology modelling using SWISS-MODEL Workspace. Nature Protocols, 4(1), 1-13.
Schwede, Torsten; Sali, Andrej; Honig, Barry; Levitt, Michael; Berman, Helen M; Jones, David; Brenner, Steven E; Burley, Stephen K; Das, Rhiju; Dokholyan, Nikolay V; Dunbrack, Roland L; Fidelis, Krzysztof; Fiser, Andras; Godzik, Adam; Huang, Yuanpeng Janet; Humblet, Christine; Jacobson, Matthew P; Joachimiak, Andrzej; Krystek, Stanley R; Kortemme, Tanja; Kryshtafovych, Andriy; Montelione, Gaetano T; Moult, John; Murray, Diana; Sanchez, Roberto; Sosnick, Tobin R; Standley, Daron M; Stouch, Terry; Vajda, Sandor; Vasquez, Max; Westbrook, John D; Wilson, Ian A (2009). Outcome of a workshop on applications of protein models in biomedical research. Structure, 17(2), 151-9.
Berman, Helen M; Westbrook, John D; Gabanyi, Margaret J; Tao, Wendy; Shah, Raship; Kouranov, Andrei; Schwede, Torsten; Arnold, Konstantin; Kiefer, Florian; Bordoli, Lorenza; Kopp, Jürgen; Podvinec, Michael; Adams, Paul D; Carter, Lester G; Minor, Wladek; Nair, Rajesh; La Baer, Joshua (2009). The protein structure initiative structural genomics knowledgebase. Nucleic acids research, 37(Database issue), D365-8.
Kiefer, Florian; Arnold, Konstantin; Künzli, Michael; Bordoli, Lorenza; Schwede, Torsten (2009). The Swiss-model Repository and associated resources. Nucleic acids research, 37(Database issue), D387-92.
2008
Schwede, T.; Sali, A.; Eswar, N.; Peitsch, M. C.: Protein Structure Modeling, in: Schwede, T.; Peitsch, M.C. (Ed.). (2008). Computational structural biology, Singapore: World Scientific , S. S. 700.
Podvinec, M.; Schwede, T.; Peitsch, M. C.: Docking for neglected diseases as community efforts, in: Schwede T; Peitsch MC (Ed.). (2008). Computational structural biology, Singapore: World Scientific Publishing , S. S. 683-704.
2007
Zosso, D.; Arnold, K.; Schwede, T.; Podvinec, M.: SWISS-TANDEM : a Web-based workspace for MS/MS protein identification on PC grid, in: Kokol, P; Podgorelec, V; MiceticTurk, D; Zorman, M; Verlic, M (Ed.). (2007). Twentieth IEEE international symposium on computer-based medical systems, Los Alamitos, Calif.: IEEE Computer Society (= CBMS 2007).
Zosso, D; Podvinec, M; Müller, M; Aebersold, R; Peitsch, M C; Schwede, T (2007). Tandem mass spectrometry protein identification on a PC grid. Studies in health technology and informatics, 126, 3-12.
Scarsi, Marco; Podvinec, Michael; Roth, Adrian; Hug, Hubert; Kersten, Sander; Albrecht, Hugo; Schwede, Torsten; Meyer, Urs A; Rücker, Christoph (2007). Sulfonylureas and glinides exhibit peroxisome proliferator-activated receptor gamma activity : a combined virtual screening and biological assay approach. Molecular pharmacology, 71(2), 398-406.
Michelsen, Kai; Schmid, Volker; Metz, Jutta; Heusser, Katja; Liebel, Urban; Schwede, Torsten; Spang, Anne; Schwappach, Blanche (2007). Novel cargo-binding site in the beta and delta subunits of coatomer. The Journal of cell biology, 179(2), 209-17.
Junne, Tina; Schwede, Torsten; Goder, Veit; Spiess, Martin (2007). Mutations in the Sec61p channel affecting signal sequence recognition and membrane protein topology. Journal of biological chemistry, 282(45), 33201-9.
Kopp, Jürgen; Bordoli, Lorenza; Battey, James N D; Kiefer, Florian; Schwede, Torsten (2007). Assessment of CASP7 predictions for template-based modeling targets. Proteins, 69 Suppl 8, 38-56.
Clarke, Neil D; Ezkurdia, Iakes; Kopp, Jürgen; Read, Randy J; Schwede, Torsten; Tress, Michael (2007). Domain Definition and Target Classification for CASP7. Proteins, 69 Suppl 8(S8), 10-8.
Bordoli, Lorenza; Kiefer, Florian; Schwede, Torsten (2007). Assessment of disorder predictions in CASP7. Proteins, 69 Suppl 8, 129-36.
Battey, James N D; Kopp, Jürgen; Bordoli, Lorenza; Read, Randy J; Clarke, Neil D; Schwede, Torsten (2007). Automated server predictions in CASP7. Proteins, 69 Suppl 8, 68-82.
2006
Podvinec, M.; Maffioletti, S.; Kunszt, P.; Arnold, K.; Cerutti, L.; Nyffeler, B.; Schlapbach, R.; Turker, C.; Stockinger, H.; Thomas, A. J.; Peitsch, M. C.; Schwede, T.: The SwissBioGrid Project : objectives, preliminary results and lessons learned, in: (2006). e-Science 2006 : 2nd IEEE International Conference on e-Science and Grid Computing, Los Alamitos, Calif.: IEEE Computer Society (= e-Science 2006, 148).
Berman, Helen M; Burley, Stephen K; Chiu, Wah; Sali, Andrej; Adzhubei, Alexei; Bourne, Philip E; Bryant, Stephen H; Dunbrack, Roland L; Fidelis, Krzysztof; Frank, Joachim; Godzik, Adam; Henrick, Kim; Joachimiak, Andrzej; Heymann, Bernard; Jones, David; Markley, John L; Moult, John; Montelione, Gaetano T; Orengo, Christine; Rossmann, Michael G; Rost, Burkhard; Saibil, Helen; Schwede, Torsten; Standley, Daron M; Westbrook, John D (2006). Outcome of a workshop on archiving structural models of biological macromolecules. Structure: with folding and design, 14(8), 1211-7.
Thorsteinsdottir, Holmfridur B.; Schwede, Torsten; Zoete, Vincent; Meuwly, Markus (2006). How inaccuracies in protein structure models affect estimates of protein-ligand interactions : computational analysis of HIV-I protease inhibitor binding. Proteins, 65(2), 407-423.
Kopp, Jürgen; Schwede, Torsten (2006). The Swiss-model Repository : new features and functionalities. Nucleic acids research, 34(Database issue), D315-8.
Arnold, Konstantin; Bordoli, Lorenza; Kopp, Jürgen; Schwede, Torsten (2006). The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. Bioinformatics, 22(2), 195-201.
Junne, Tina; Schwede, Torsten; Goder, Veit; Spiess, Martin (2006). The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability. Molecular biology of the cell, 17(9), 4063-8.
2004
Kopp, Jürgen; Schwede, Torsten (2004). The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic acids research, 32(Database issue), D230-4.
Kopp, Jurgen; Schwede, Torsten (2004). Automated protein structure homology modeling : a progress report. Pharmacogenomics, 5(4), 405-16.
2003
Fritzsche, Hanna B; Schwede, Torsten; Schulz, Georg E (2003). Covalent and three-dimensional structure of the cyclodextrinase from Flavobacterium sp. no. 92. European journal of biochemistry, 270(10), 2332-41.
Deutsch, Samuel; Rideau, Alexandra; Bochaton-Piallat, Marie-Luce; Merla, Giuseppe; Geinoz, Antoine; Gabbiani, Giulio; Schwede, Torsten; Matthes, Thomas; Antonarakis, Stylianos E; Beris, Photis (2003). Asp1424Asn MYH9 mutation results in an unstable protein responsible for the phenotypes in May-Hegglin anomaly/Fechtner syndrome. Blood, 102(2), 529-34.
Schwede, Torsten; Kopp, Jürgen; Guex, Nicolas; Peitsch, Manuel C (2003). Swiss-model : an automated protein homology-modeling server. Nucleic acids research, 31(13), 3381-5.
2002
Kopp, J.; Peitsch, M. C.; Schwede, T.: Protein Structure Modeling in Functional Genomics, in: (2002). Frontiers in Computational Genomics, Horizon Scientific Press: Horizon Scientific Press .
Peitsch, M.C.; Schwede, T.; Diemand, A.; Guex, N. (2002). Protein homology modeling. Nature encyclopedia of the human genome, 4
Guex, Nicolas; Schwede, Torsten; Peitsch, Manuel C.: Imaging science in biochemistry, in: Hornak, Joseph P. (Ed.). (2002). Encyclopedia of imaging science and technology, New York: John Wiley & Sons , S. n.a. (online book).
Wattenhofer, M.; Di Iorio, M.V.; Rabionet, R.; Dougherty, L.; Pampanos, A.; Schwede, T.; Montserrat-Sentis, B.; Arbones, M.L.; Iliades, T.; Pasquadibisceglie, A.; D'Amelio, M.; Alwan, S.; Rossier, C.; Dahl, H.H.M.; Petersen, M.B.; Estivill, X.; Gasparini, P.; Scott, H.S.; Antonarakis, S.E. (2002). Mutations in the TMPRSS3 gene are a rare cause of childhood non-syndromic deafness in Caucasian patients. Journal of molecular medicine, 80, 124-131.
2001
Masmoudi, S; Antonarakis, S E; Schwede, T; Ghorbel, A M; Gratri, M; Pappasavas, M P; Drira, M; Elgaied-Boulila, A; Wattenhofer, M; Rossier, C; Scott, H S; Ayadi, H; Guipponi, M (2001). Novel missense mutations of TMPRSS3 in two consanguineous Tunisian families with non-syndromic autosomal recessive deafness. Human mutation, 18(2), 101-8.
2000
Guex, N.; Schwede, T.; Peitsch, M. C.: Protein Tertiary Structure Modeling, in: (2000). Current Protocols in Protein Science, [New York]: Wiley (= nit 2.8.1-2.8.17), S. 2.8.1-2.8.17.
Peitsch, M C; Schwede, T; Guex, N (2000). Automated protein modelling-the proteome in 3D. Pharmacogenomics, 1(3), 257-66.
Schwede, T; Diemand, A; Guex, N; Peitsch, M C (2000). Protein structure computing in the genomic era. Research in microbiology, 151(2), 107-12.
1999
Schwede, TF; Badeker, M; Langer, M; Retey, J; Schulz, GE (1999). Homogenization and Crystallization of Histidine Ammonia-Lyase by Exchange of a Surface Cysteine Residue. Protein Engineering, 12, 151-153.
Schwede, TF; Retey, J; Schulz, GE (1999). Crystal Structure of Histidine Ammonia-Lyase Revealing a Novel Polypeptide Modification as the Catalytic Electrophile. Biochemistry, 38, 5355-5361.

Get list as pdf

Get list as text (rtf)