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Neher, Richard A.; Gerland, Ulrich (2004). Dynamics of force-induced DNA slippage. Physical Review Letters, 93(19), 198102.

Cabernard, Clemens; Neumann, Marc; Affolter, Markus (2004). Cellular and molecular mechanisms involved in branching morphogenesis of the Drosophila tracheal system. Journal of applied physiology, 97(6), 2347-53.

Washbourne, Philip; Dityatev, Alexander; Scheiffele, Peter; Biederer, Thomas; Weiner, Joshua A; Christopherson, Karen S; El-Husseini, Alaa (2004). Cell adhesion molecules in synapse formation. Journal of neuroscience, 24(42), 9244-9.

Martin, D. E.; Demougin, P.; Hall, M. N.; Bellis, M. (2004). Rank difference analysis of microarrays (RDAM), a novel approach to statistical analysis of microarray expression profiling data. BMC Bioinformatics, 5, 148.

Neher, Richard A.; Neher, Erwin (2004). Applying spectral fingerprinting to the analysis of FRET images. Microscopy Research and Technique, 64(2), 185-95.

Aerni, Amanda; Traber, Rafael; Hock, Christoph; Roozendaal, Benno; Schelling, Gustav; Papassotiropoulos, Andreas; Nitsch, Roger M.; Schnyder, Ulrich; de Quervain, Dominique J.-F. (2004). Low-dose cortisol for symptoms of posttraumatic stress disorder. American Journal of Psychiatry, 161(8), 1488-90.

Deogracias, Rubén; Espliguero, Gemma; Iglesias, Teresa; Rodríguez-Peña, Angeles (2004). Expression of the neurotrophin receptor trkB is regulated by the cAMP/CREB pathway in neurons. Molecular and Cellular Neurosciences, 26(3), 470-80.

Leptin, Maria; Affolter, Markus (2004). Drosophila gastrulation : identification of a missing link. Current biology, 14(12), R480-2.

Kalinovsky, A.; Scheiffele, P. (2004). Transcriptional control of synaptic differentiation by retrograde signals. Current Opinion in Neurobiology, 14(3), 272-9.

Stahlberg, H; Kutejová, E; Muchová, K; Gregorini, M; Lustig, A; Müller, S A; Olivieri, V; Engel, A; Wilkinson, A J; Barák, I (2004). Oligomeric structure of the Bacillus subtilis cell division protein DivIVA determined by transmission electron microscopy. Molecular microbiology, 52(5), 1281-90.

Chih, Ben; Afridi, Shehla Khan; Clark, Lorraine; Scheiffele, Peter (2004). Disorder-associated mutations lead to functional inactivation of neuroligins. Human molecular genetics, 13(14), 1471-7.

Niehus, Eike; Gressmann, Helga; Ye, Fang; Schlapbach, Ralph; Dehio, Michaela; Dehio, Christoph; Stack, Allison; Meyer, Thomas F; Suerbaum, Sebastian; Josenhans, Christine (2004). Genome-wide analysis of transcriptional hierarchy and feedback regulation in the flagellar system of Helicobacter pylori. Molecular microbiology, 52(4), 947-61.

Mootha, Vamsi K.; Handschin, Christoph; Arlow, Dan; Xie, Xiaohui; St Pierre, Julie; Sihag, Smita; Yang, Wenli; Altshuler, David; Puigserver, Pere; Patterson, Nick; Willy, Patricia J.; Schulman, Ira G.; Heyman, Richard A.; Lander, Eric S.; Spiegelman, Bruce M. (2004). Erralpha and Gabpa/b specify PGC-1alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle.. Proceedings of the National Academy of Sciences of the United States of America, 101(17), 6570-5.

Becskei, Attila; Boselli, Monica G.; van Oudenaarden, Alexander (2004). Amplitude control of cell-cycle waves by nuclear import. Nature Cell Biology, 6(5), 451-7.

Güthe, Sarah; Kapinos, Larisa; Möglich, Andreas; Meier, Sebastian; Grzesiek, Stephan; Kiefhaber, Thomas (2004). Very fast folding and association of a trimerization domain from bacteriophage T4 fibritin. Journal of molecular biology, 337(4), 905-15.

Dietrich, Fred S; Voegeli, Sylvia; Brachat, Sophie; Lerch, Anita; Gates, Krista; Steiner, Sabine; Mohr, Christine; Pöhlmann, Rainer; Luedi, Philippe; Choi, Sangdun; Wing, Rod A; Flavier, Albert; Gaffney, Thomas D; Philippsen, Peter (2004). The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome. Science, 304(5668), 304-7.

Zahringer, U.; Lindner, B.; Knirel, Y. A.; van den Akker, W. M. R.; Hiestand, R.; Heine, H.; Dehio, C. (2004). Structure and biological activity of the short-chain lipopolysaccharide from Bartonella henselae ATCC 49882T. Journal of Biological Chemistry, 279(20), 21046-54.

Tafer, Hakim; Hiller, Sebastian; Hilty, Christian; Fernández, César; Wüthrich, Kurt (2004). Nonrandom structure in the urea-unfolded Escherichia coli outer membrane protein X (OmpX). Biochemistry, 43(4), 860-9.

de Quervain, Dominique J.-F.; Poirier, Raphael; Wollmer, M. Axel; Grimaldi, Luigi M. E.; Tsolaki, Magdalini; Streffer, Johannes R.; Hock, Christoph; Nitsch, Roger M.; Mohajeri, M. Hasan; Papassotiropoulos, Andreas (2004). Glucocorticoid-related genetic susceptibility for Alzheimer's disease. Human Molecular Genetics, 13(1), 47-52.

Arber, S; Wong, R (2004). Neuronal and glial cell biology. Current opinion in neurobiology, 14(5), 519-521.

Crespo, J. L.; Helliwell, S. B.; Wiederkehr, C.; Demougin, P.; Fowler, B.; Primig, M.; Hall, M. N. (2004). NPR1 kinase and RSP5-BUL1/2 ubiquitin ligase control GLN3-dependent transcription in Saccharomyces cerevisiae. Journal of Biological Chemistry, 279(36), 37512-37517.

Hall, M. N.; Raff, M.; Thomas, G. (Ed.). (2004). Cell Growth : Control of Cell Size. New York: Cold Spring Harbor Laboratory Press (=42).

Thomas, G.; Sabatini, D. M.; Hall, M. N. (Ed.). (2004). TOR : Target of Rapamycin. Heidelberg: Springer Verlag GmbH (=279).

Audhya, A.; Loewith, R.; Parsons, A. B.; Gao, L.; Tabuchi, M.; Zhou, H.; Boone, C.; Hall, M. N.; Emr, S. D. (2004). Genome-wide lethality screen identifies new PI4,5P2 effectors that regulate the actin cytoskeleton. The EMBO Journal, 23(19), 3747-3757.

Burri, L.; Vascotto, K.; Fredersdorf, S.; Tiedt, R.; Hall, M. N.; Lithgow, T. (2004). Zim17 : a novel zinc finger protein essential for protein import into mitochondria. Journal of Biological Chemistry, 279(48), 50243-50249.

Martin, D. E.; Soulard, A.; Hall, M. N. (2004). TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1. Cell, 119(7), 969-979.

Jacinto, E.; Loewith, R.; Schmidt, A.; Lin, S.; Rüegg, M. A.; Hall, A.; Hall, M. N. (2004). Mammalian TOR complex 2 controls the actin cytoskeleton and is rapamycin insensitive. Nature Cell Biology, 6(11), 1122-1128.

Morales-Johansson, H.; Jenoe, P.; Cooke, F. T.; Hall, M. N. (2004). Negative regulation of phosphatidylinositol 4,5-bisphosphate levels by the INP51-associated proteins TAX4 and IRS4. Journal of Biological Chemistry, 279(38), 39604-39610.

Schmelzle, T.; Beck, T.; Martin, D. E.; Hall, M. N. (2004). Activation of the RAS/cyclic AMP pathway suppresses a TOR deficiency in yeast. Molecular and Cellular Biology, 24(1), 338-351.

Lorberg, A.; Hall, M. N. (2004). TOR - the first 10 years. Current Topics in Microbiology and Immunology, 279, 1-18.

Loewith, R.; Hall, M. N.: TOR signaling in yeast: temporal and spatial control of cell growth, in: Hall, M. N.; Raff, M.; Thomas, G. (Ed.). (2004). Cell Growth: Control of Cell Size, New York: Cold Spring Harbor Laboratory Press (= 42), S. 139-166.

Georgakopoulou, S; van Grondelle, R; van der Zwan, G (2004). Circular dichroism of carotenoids in bacterial light-harvesting complexes : experiments and modeling. Biophysical journal, 87(5), 3010-22.

Maddalena, Alessia S.; Papassotiropoulos, Andreas; Gonzalez-Agosti, Charo; Signorell, Andri; Hegi, Thomas; Pasch, Thomas; Nitsch, Roger M.; Hock, Christoph (2004). Cerebrospinal fluid profile of amyloid beta peptides in patients with Alzheimer's disease determined by protein biochip technology. Neuro-degenerative Diseases, 1(4-5), 231-5.

Alberici, A; Gobbo, C; Panzacchi, A; Nicosia, F; Ghidoni, R; Benussi, L; Hock, C; Papassotiropoulos, A; Liberini, P; Growdon, J H; Frisoni, G B; Villa, A; Zanetti, O; Cappa, S; Fazio, F; Binetti, G (2004). Frontotemporal dementia : impact of P301L tau mutation on a healthy carrier. Journal of neurology, neurosurgery, and psychiatry, 75(11), 1607-10.

Chen, Feng; Wollmer, M Axel; Hoerndli, Frederic; Münch, Gerald; Kuhla, Björn; Rogaev, Evgeny I; Tsolaki, Magdalini; Papassotiropoulos, Andreas; Götz, Jürgen (2004). Role for glyoxalase I in Alzheimer's disease. Proceedings of the National Academy of Sciences of the United States of America, 101(20), 7687-92.

Spang, A. (2004). Vesicle transport : a close collaboration of Rabs and effectors. Current Biology, 14(1), R33-4.

Hofbauer, K. G.; Keller, U.; Boss, O. (Ed.). (2004). Pharmacotherapy of obesity : options and alternatives. Boca Raton, FL, USA: CRC Press.

Akiyama, T.; Gullo, M.R.; De Rooij, N.F.; Staufer, U.; Tonin, A.; Frederix, P.L.T.M.; Engel, A. (2004). Development of Insulated Conductive Probes with Platinum-Silicide Tips for AFM in Cell Biology. Japanese journal of applied physics. Part 1, Regular papers, short notes & review papers, 43, 3865-3867.

Bucior, Iwona; Scheuring, Simon; Engel, Andreas; Burger, Max M (2004). Carbohydrate-carbohydrate interaction provides adhesion force and specificity for cellular recognition. The Journal of cell biology, 165(4), 529-37.

Conroy, Matthew J; Jamieson, Stuart J; Blakey, Daniel; Kaufmann, Thomas; Engel, Andreas; Fotiadis, Dimitrios; Merrick, Mike; Bullough, Per A (2004). Electron and atomic force microscopy of the trimeric ammonium transporter AmtB. EMBO reports, 5(12), 1153-8.

Palczewski, K. (2004). A concept for G protein activation by G protein-coupled receptor dimers : the transducin/rhodopsin interface. Photochemical & photobiological sciences, 3(6), 628-38.

Fotiadis, Dimitrios; Qian, Pu; Philippsen, Ansgar; Bullough, Per A; Engel, Andreas; Hunter, C Neil (2004). Structural Analysis of the Reaction Center Light-harvesting Complex I Photosynthetic Core Complex of Rhodospirillum rubrum Using Atomic Force Microscopy. Journal of biological chemistry, 279(3), 2063-8.

Frederix, P.L.T.M.; Hoogenboom, B.W.; Fotiadis, D.; Müller, D. J.; Engel, A (2004). Atomic Force Microscopy of Biological Samples. MRS bulletin : a publication of the Materials Research Society, 29(July), 449-455.

Jastrzebska, Beata; Maeda, Tadao; Zhu, Li; Fotiadis, Dimitrios; Filipek, Slawomir; Engel, Andreas; Stenkamp, Ronald E; Palczewski, Krzysztof (2004). Functional characterization of rhodopsin monomers and dimers in detergents. Journal of biological chemistry, 279(52), 54663-75.

Köhler, Rolf; Schäfer, Karsten; Müller, Shirley; Vignon, Guillaume; Diederichs, Kay; Philippsen, Ansgar; Ringler, Philippe; Pugsley, Anthony P; Engel, Andreas; Welte, Wolfram (2004). Structure and assembly of the pseudopilin PulG. Molecular microbiology, 54(3), 647-64.

Liang, Yan; Fotiadis, Dimitrios; Maeda, Tadao; Maeda, Akiko; Modzelewska, Anna; Filipek, Slawomir; Saperstein, David A; Engel, Andreas; Palczewski, Krzysztof (2004). Rhodopsin signaling and organization in heterozygote rhodopsin knockout mice. Journal of biological chemistry, 279(46), 48189-96.

Siebert, C Alistair; Qian, Pu; Fotiadis, Dimitrios; Engel, Andreas; Hunter, C Neil; Bullough, Per A (2004). Molecular architecture of photosynthetic membranes in Rhodobacter sphaeroides : the role of PufX. The EMBO journal, 23(4), 690-700.

Schirmer, Tilman: Structure-Function Relationships in Sugar-Specific Porins, in: Benz, Roland (Ed.). (2004). Bacterial and Eukaryotic Porins: Structure, Function, Mechanism, Switzerland: Wiley-VCH Verlag GmbH & Co. KGaA , S. 169-181.

Lim, Roderick Y. H.; O'Shea, S. J. (2004). Discrete solvation layering in confined binary liquids. Langmuir, 20(12), 4916-9.

Ferguson, Neil; Schartau, Pamela J.; Sharpe, Timothy D.; Sato, Satoshi; Fersht, Alan R. (2004). One-state downhill versus conventional protein folding. Journal of Molecular Biology, 344(2), 295-301.

Gehring, WJ (2004). Precis of Edwin G. Conklin's JEZ article, "Mosaic Development in Ascidian Eggs". Journal of Experimental Zoology. Part A, Comparative Experimental Biology, 301A(6), 461-463.

Neher, R; Neher, E (2004). Optimizing imaging parameters for the separation of multiple labels in a fluorescence image. Journal of Microscopy, 213(Pt 1), 46-62.

Martin, G.; Möglich, A.; Keller, W.; Doublié., S. (2004). Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase. Journal of Molecular Biology, 341(4), 911-25.

Dettwiler, S.; Aringhieri, C.; Cardinale, S.; Keller, W.; Barabino, S. M. L. (2004). Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization. Journal of biological chemistry, 279(34), 35788-97.

Dichtl, Bernhard; Aasland, Rein; Keller, Walter (2004). Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation. RNA, 10(6), 965-77.

Martin, Georges; Keller, Walter (2004). Sequence motifs that distinguish ATP(CTP) : tRNA nucleotidyl transferases from eubacterial poly(A) polymerases. RNA, 10(6), 899-906.

Kaufmann, I.; Martin, G.; Friedlein, A.; Langen, H.; Keller, W. (2004). Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase. The EMBO Journal, 23(3), 616-26.

Stetefeld, Jörg; Alexandrescu, Andrei T; Maciejewski, Mark W; Jenny, Margrit; Rathgeb-Szabo, Klara; Schulthess, Therese; Landwehr, Ruth; Frank, Sabine; Ruegg, Markus A; Kammerer, Richard A (2004). Modulation of agrin function by alternative splicing and Ca2+ binding. Structure: with folding and design, 12(3), 503-15.

Kong, Xian Chu; Barzaghi, Patrizia; Ruegg, Markus A (2004). Inhibition of synapse assembly in mammalian muscle in vivo by RNA interference. EMBO reports, 5(2), 183-8.

Fan, Melina; Rhee, James; St-Pierre, Julie; Handschin, Christoph; Puigserver, Pere; Lin, Jiandie; Jäeger, Sibylle; Erdjument-Bromage, Hediye; Tempst, Paul; Spiegelman, Bruce M (2004). Suppression of mitochondrial respiration through recruitment of p160 myb binding protein to PGC-1α : modulation by p38 MAPK. Genes & development, 18(3), 278-89.

Handschin, Christoph; Blättler, Sharon; Roth, Adrian; Looser, Renate; Oscarson, Mikael; Kaufmann, Michel R; Podvinec, Michael; Gnerre, Carmela; Meyer, Urs A (2004). The evolution of drug-activated nuclear receptors : one ancestral gene diverged into two xenosensor genes in mammals. Nuclear Receptor, 2(1), 7.

Podvinec, M.; Handschin, C.; Looser, R.; Meyer, U. A. (2004). Identification of the xenosensors regulating human 5-aminolevulinate synthase. Proceedings of the National Academy of Sciences of the United States of America, 101(24), 9127-32.

Jaźwińska, Anna; Affolter, Markus (2004). A family of genes encoding zona pellucida (ZP) domain proteins is expressed in various epithelial tissues during Drosophila embryogenesis. Gene Expression Patterns, 4(4), 413-21.

Hofbauer, K. G.; Keller, U.; Boss, O.: Perspectives and outlook, in: (2004). Pharmacotherapy of obesity, Boca Raton, FL, USA: CRC Press , S. S. 467-471.

Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). Theoretical and computational models of biological ion channels. Quarterly Reviews of Biophysics, 37(1), 15-103.

Zheng, Lei; Kostrewa, Dirk; Bernèche, Simon; Winkler, Fritz K; Li, Xiao-Dan (2004). The mechanism of ammonia transport based on the crystal structure of AmtB of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America, 101(49), 17090-5.

Noskov, Sergei Yu; Bernèche, Simon; Roux, Benoît (2004). Control of ion selectivity in potassium channels by electrostatic and dynamic properties of carbonyl ligands. Nature, 431(7010), 830-4.

Sasai, Kaori; Katayama, Hiroshi; Stenoien, David L; Fujii, Satoshi; Honda, Reiko; Kimura, Masashi; Okano, Yukio; Tatsuka, Masaaki; Suzuki, Fumio; Nigg, Erich A; Earnshaw, William C; Brinkley, William R; Sen, Subrata (2004). Aurora-C kinase is a novel chromosomal passenger protein that can complement Aurora-B kinase function in mitotic cells. Cell Motility And The Cytoskeleton, 59(4), 249-63.

Fletcher, Lynda; Cerniglia, George J; Nigg, Erich A; Yend, Tim J; Muschel, Ruth J (2004). Inhibition of centrosome separation after DNA damage : a role for Nek2.. Radiation research, 162(2), 128-35.

Krämer, Alwin; Mailand, Niels; Lukas, Claudia; Syljuåsen, Randi G; Wilkinson, Christopher J; Nigg, Erich A; Bartek, Jiri; Lukas, Jiri (2004). Centrosome-associated Chk1 prevents premature activation of cyclin-B-Cdk1 kinase. Nature cell biology, 6(9), 884-91.

Mishima, Masanori; Pavicic, Visnja; Grüneberg, Ulrike; Nigg, Erich A; Glotzer, Michael (2004). Cell cycle regulation of central spindle assembly. Nature, 430(7002), 908-13.

Gruneberg, Ulrike; Neef, Rüdiger; Honda, Reiko; Nigg, Erich A; Barr, Francis A (2004). Relocation of Aurora B from centromeres to the central spindle at the metaphase to anaphase transition requires MKlp2. The Journal of cell biology, 166(2), 167-72.

Gassmann, Reto; Carvalho, Ana; Henzing, Alexander J; Ruchaud, Sandrine; Hudson, Damien F; Honda, Reiko; Nigg, Erich A; Gerloff, Dietlind L; Earnshaw, William C (2004). Borealin : a novel chromosomal passenger required for stability of the bipolar mitotic spindle. The Journal of cell biology, 166(2), 179-91.

Stucke, Volker M; Baumann, Christoph; Nigg, Erich A (2004). Kinetochore localization and microtubule interaction of the human spindle checkpoint kinase Mps1. Chromosoma, 113(1), 1-15.

Barr, Francis A; Silljé, Herman H W; Nigg, Erich A (2004). Polo-like kinases and the orchestration of cell division. Nature reviews. Molecular cell biology, 5(6), 429-40.

Steensgaard, Peter; Garrè, Massimiliano; Muradore, Ivan; Transidico, Pietro; Nigg, Erich A; Kitagawa, Katsumi; Earnshaw, William C; Faretta, Mario; Musacchio, Andrea (2004). Sgt1 is required for human kinetochore assembly. EMBO reports, 5(6), 626-31.

Meraldi, Patrick; Honda, Reiko; Nigg, Erich A (2004). Aurora kinases link chromosome segregation and cell division to cancer susceptibility. Current opinion in genetics & development, 14(1), 29-36.

Sprecher, Simon G; Müller, Martin; Kammermeier, Lars; Miller, David F B; Kaufman, Thomas C; Reichert, Heinrich; Hirth, Frank (2004). Hox gene cross-regulatory interactions in the embryonic brain of Drosophila. Mechanisms of Development, 121(6), 527-36.

Loop, Thomas; Leemans, Ronny; Stiefel, Urs; Hermida, Leandro; Egger, Boris; Xie, Fukang; Primig, Michael; Certa, Ulrich; Fischbach, Karl-Friedrich; Reichert, Heinrich; Hirth, Frank (2004). Transcriptional signature of an adult brain tumor in Drosophila. BMC Genomics, 5(1), 24.

Dehio, Christoph; Sauder, Ursula; Hiestand, Rosemarie (2004). Isolation of Bartonella schoenbuchensis from Lipoptena cervi, a blood-sucking arthropod causing deer ked dermatitis. Journal of clinical microbiology, 42(11), 5320-3.

Dehio, Christoph (2004). Molecular and cellular basis of bartonella pathogenesis. Annual review of microbiology, 58, 365-90.

Schmid, Michael C; Schulein, Ralf; Dehio, Michaela; Denecker, Geertrui; Carena, Ilaria; Dehio, Christoph (2004). The VirB type IV secretion system of Bartonella henselae mediates invasion, proinflammatory activation and antiapoptotic protection of endothelial cells. Molecular microbiology, 52(1), 81-92.

Hippenmeyer, Simon; Kramer, Ina; Arber, Silvia (2004). Control of neuronal phenotype : what targets tell the cell bodies. Trends in neurosciences, 27(8), 482-8.

Arber, Silvia (2004). Subplate neurons : bridging the gap to function in the cortex. Trends in neurosciences, 27(3), 111-3.

Niederkofler, Vera; Salie, Rishard; Sigrist, Markus; Arber, Silvia (2004). Repulsive guidance molecule (RGM) gene function is required for neural tube closure but not retinal topography in the mouse visual system. Journal of neuroscience, 24(4), 808-18.

Denecker, G.; Cornelis, G. R.: How Yersinia escapes the host : to Yop or not to Yop, in: Lamont, R.J. (Ed.). (2004). Bacterial invasion of host cells, Cambridge: University Press , S. S. 59-86.

Marenne, M. N.; Mota, L. J.; Cornelis, G. R.: The pYV Plasmid and the Ysc-Yop Type III Secretion System, in: Carniel, E.; Hinnebusch, B.J. (Ed.). (2004). Yersinia, Wymondham: Horizon Bioscience , S. S. 319-348.

Benabdillah, Rachid; Mota, Luís Jaime; Lützelschwab, Silke; Demoinet, Emilie; Cornelis, Guy R (2004). Identification of a nuclear targeting signal in YopM from Yersinia spp. Microbial pathogenesis, 36(5), 247-61.

Burghout, Peter; Beckers, Frank; de Wit, Emmie; van Boxtel, Ria; Cornelis, Guy R; Tommassen, Jan; Koster, Margot (2004). Role of the pilot protein YscW in the biogenesis of the YscC secretin in Yersinia enterocolitica. Journal of bacteriology, 186(16), 5366-75.

Schotte, Peter; Denecker, Geertrui; Van Den Broeke, Aeke; Vandenabeele, Peter; Cornelis, Guy R; Beyaert, Rudi (2004). Targeting Rac1 by the Yersinia effector protein YopE inhibits caspase-1-mediated maturation and release of interleukin-1beta. Journal of Biological Chemistry, 279(24), 25134-42.

Schreiber, Sylvia N; Emter, Roger; Hock, M Benjamin; Knutti, Darko; Cardenas, Jessica; Podvinec, Michael; Oakeley, Edward J; Kralli, Anastasia (2004). The estrogen-related receptor α (ERRα) functions in PPARγ coactivator 1α (PGC-1α)-induced mitochondrial biogenesis. Proceedings of the National Academy of Sciences of the United States of America, 101(17), 6472-7.

Kopp, Jurgen; Schwede, Torsten (2004). Automated protein structure homology modeling : a progress report. Pharmacogenomics, 5(4), 405-16.

Kopp, J.; Schwede, T. (2004). The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. Nucleic Acids Research, 32(1 Supplement), D230-D234.

Garcia, Pilar; Marino, Marco; Mayans, Olga (2004). Crystallization and preliminary X-ray analysis of the coiled-coil domain of dystrophia myotonica kinase. Acta Crystallographica. Section D, Biological Crystallography, 60(Pt 12 Pt 2), 2336-9.

Walburger, A.; Koul, A.; Ferrari, G.; Nguyen, L.; Prescianotto-Baschong, C.; Huygen, K.; Klebl, B.; Thompson, C.; Bacher, G.; Pieters, J. (2004). Protein kinase G from pathogenic mycobacteria promotes survival within macrophages. Science, 304(5678), 1800-4.

Bibel, Miriam; Richter, Jens; Schrenk, Katrin; Tucker, Kerry Lee; Staiger, Volker; Korte, Martin; Goetz, Magdalena; Barde, Yves-Alain (2004). Differentiation of mouse embryonic stem cells into a defined neuronal lineage. Nature neuroscience, 7(9), 1003-9.

Plachta, Nicolas; Bibel, Miriam; Tucker, Kerry Lee; Barde, Yves-Alain (2004). Developmental potential of defined neural progenitors derived from mouse embryonic stem cells. Development, 131(21), 5449-56.

Barde, Y-A (2004). Death of injured neurons caused by the precursor of nerve growth factor. Proceedings of the National Academy of Sciences of the United States of America, 101(16), 5703-4.

Fahrenkrog, Birthe; Köser, Joachim; Aebi, Ueli (2004). The nuclear pore complex : a jack of all trades?. Trends in biochemical sciences, 29(4), 175-82.

Fahrenkrog, Birthe; Sauder, Ursula; Aebi, Ueli (2004). The S. cerevisiae HtrA-like protein Nma111p is a nuclear serine protease that mediates yeast apoptosis. Journal of cell science, 117(Pt 1), 115-26.

Pfeffer, S; Zavolan, M; Grasser, FA; Chien, MC; Russo, JJ; Ju, JY; John, B; Enright, AJ; Marks, D; Sander, C; Tuschl, T (2004). Identification of virus-encoded microRNAs. Science, 304(5671), 734-736.

Dumitru, Georgeta L; Groemping, Yvonne; Klostermeier, Dagmar; Restle, Tobias; Deuerling, Elke; Reinstein, Jochen (2004). DafA cycles between the DnaK chaperone system and translational machinery. Journal of molecular biology, 339(5), 1179-89.

Klostermeier, D.; Sears, P.; Wong, C. -H.; Millar, D. P.; Williamson, J. R. (2004). A three-fluorophore FRET assay for high-throughput screening of small-molecule inhibitors of ribosome assembly. Nucleic Acids Research, 32(9), 2707-2715.

Kamena, F.; Spang, A. (2004). Tip20p prohibits back-fusion of COPII vesicles with the endoplasmic reticulum. Science, 304(5668), 286-9.

Lewis, S. M.; Poon, P. P.; Singer, R. A.; Johnston, G. C.; Spang, A. (2004). The ArfGAP Glo3 is required for the generation of COPI vesicles. Molecular Biology of the Cell, 15(9), 4064-4072.

Trautwein, M.; Dengjel, J.; Schirle, M.; Spang, A. (2004). Arf1p provides an unexpected link between COPI vesicles and mRNA in Saccharomyces cerevisiae. Molecular Biology of the Cell, 15(11), 5021-37.

Marowsky, Anne; Fritschy, Jean-Marc; Vogt, Kaspar E (2004). Functional mapping of GABA A receptor subtypes in the amygdala. The European journal of neuroscience, 20(5), 1281-9.

Arnold, H.; Bumann, D.; Felies, M.; Gewecke, B.; Sorensen, M.; Gessner, J. E.; Freihorst, J.; von Specht, B. U.; Baumann, U. (2004). Enhanced immunogenicity in the murine airway mucosa with an attenuated Salmonella live vaccine expressing OprF-OprI from Pseudomonas aeruginosa. Infection and Immunity, 72(11), 6546-53.

Bumann, D.; Habibi, H.; Kan, B.; Schmid, M.; Goosmann, C.; Brinkmann, V.; Meyer, T. F.; Jungblut, P. R. (2004). Lack of stage-specific proteins in coccoid Helicobacter pylori cells. Infection and Immunity, 72(11), 6738-42.

Bumann, D.; Jungblut, P. R.; Meyer, T. F. (2004). Helicobacter pylori vaccine development based on combined subproteome analysis. Proteomics, 4(10), 2843-8.

Metzger, W. G.; Mansouri, E.; Kronawitter, M.; Diescher, S.; Soerensen, M.; Hurwitz, R.; Bumann, D.; Aebischer, T.; Von Specht, B. -U.; Meyer, T. F. (2004). Impact of vector-priming on the immunogenicity of a live recombinant Salmonella enterica serovar typhi Ty21a vaccine expressing urease A and B from Helicobacter pylori in human volunteers. Vaccine, 22(17-18), 2273-7.

Rollenhagen, C.; Sorensen, M.; Rizos, K.; Hurvitz, R.; Bumann, D. (2004). Antigen selection based on expression levels during infection facilitates vaccine development for an intracellular pathogen. Proceedings of the National Academy of Sciences of the United States of America, 101(23), 8739-44.

Ferbitz, L.; Maier, Timm; Patzelt, H.; Bukau, B.; Deuerling, E.; Ban, N. (2004). Trigger factor in complex with the ribosome forms a molecular cradle for nascent proteins. Nature, 431(7008), 590-6.

Schultz-Heienbrok, R.; Maier, Timm; Strater, N. (2004). Trapping a 96 degrees domain rotation in two distinct conformations by engineered disulfide bridges. Protein Science, 13(7), 1811-22.

Gehring, Walter J (2004). Historical perspective on the development and evolution of eyes and photoreceptors. The International Journal of Developmental Biology, 48(8-9), 707-17.

Punzo, Claudio; Plaza, Serge; Seimiya, Makiko; Schnupf, Pamela; Kurata, Shoichiro; Jaeger, Johannes; Gehring, Walter J (2004). Functional divergence between eyeless and twin of eyeless in Drosophila melanogaster. Development, 131(16), 3943-53.

Heerklotz, Heiko; Wieprecht, Torsten; Seelig, Joachim (2004). Membrane perturbation by the lipopeptide surfactin and detergents as studied by deuterium NMR. Journal of Physical Chemistry B, 108(15), 4909-4915.

Schwarz, R.; Seelig, J.; Kunnecke, B. (2004). Structural properties of perfluorinated linear alkanes : a 19F and 13C NMR study of perfluorononane. Magnetic Resonance in Chemistry, 42(6), 512-7.

Seelig, J (2004). Thermodynamics of lipid-peptide interactions. Biochimica et biophysica acta, 1666(1-2), 40-50.

Anderson, Thomas G; Tan, Anmin; Ganz, Peter; Seelig, Joachim (2004). Calorimetric measurement of phospholipid interaction with methyl-beta-cyclodextrin. Biochemistry, 43(8), 2251-61.

Ziegler, André; Seelig, Joachim (2004). Interaction of the protein transduction domain of HIV-1 TAT with heparan sulfate : binding mechanism and thermodynamic parameters. Biophysical journal, 86(1 Pt 1), 254-63.

Bauer, Y.; Knechtle, P.; Wendland, J.; Helfer, H.; Philippsen, P. (2004). A Ras-like GTPase is involved in hyphal growth guidance in the filamentous fungus Ashbya gossypii. Molecular Biology of the Cell, 15(10), 4622-4632.

Wiederkehr, C.; Basavaraj, R.; Sarrauste de Menthiere, C.; Hermida, L.; Koch, R.; Schlecht, U.; Amon, A.; Brachat, S.; Breitenbach, M.; Briza, P.; Caburet, S.; Cherry, M.; Davis, R.; Deutschbauer, A.; Dickinson, H. G.; Dumitrescu, T.; Fellous, M.; Goldman, A.; Grootegoed, J. A.; Hawley, R.; Ishii, R.; Jegou, B.; Kaufman, R. J.; Klein, F.; Lamb, N.; Maro, B.; Nasmyth, K.; Nicolas, A.; Orr-Weaver, T.; Philippsen, P.; Pineau, C.; Rabitsch, K. P.; Reinke, V.; Roest, H.; Saunders, W.; Schroder, M.; Schedl, T.; Siep, M.; Villeneuve, A.; Wolgemuth, D. J.; Yamamoto, M.; Zickler, D.; Esposito, R. E.; Primig, M. (2004). GermOnline, a cross-species community knowledgebase on germ cell differentiation. Nucleic Acids Research, 32(Database issue), D560-7.

Suda, Kitaru; Filipek, Slawomir; Palczewski, Krzysztof; Engel, Andreas; Fotiadis, Dimitrios (2004). The supramolecular structure of the GPCR rhodopsin in solution and native disc membranes. Molecular Membrane Biology, 21(6), 435-46.

Fotiadis, Dimitrios; Liang, Yan; Filipek, Slawomir; Saperstein, David A; Engel, Andreas; Palczewski, Krzysztof (2004). The G protein-coupled receptor rhodopsin in the native membrane. FEBS letters, 564(3), 281-8.

Fotiadis, D.; Engel, A. (2004). High-resolution imaging of bacteriorhodopsin by atomic force microscopy. Methods in Molecular Biology, 242, 291-303.

Breuza, Lionel; Halbeisen, Regula; Jenö, Paul; Otte, Stefan; Barlowe, Charles; Hong, Wanjin; Hauri, Hans-Peter (2004). Proteomics of endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membranes from brefeldin A-treated HepG2 cells identifies ERGIC-32 : a new cycling protein that interacts with human Erv46. Journal of Biological Chemistry, 279(45), 47242-53.

Appenzeller-Herzog, Christian; Roche, Annie-Claude; Nufer, Oliver; Hauri, Hans-Peter (2004). pH-induced conversion of the transport lectin ERGIC-53 triggers glycoprotein release. Journal of Biological Chemistry, 279(13), 12943-50.

Benjamin, D.; Colombi, M.; Moroni, C. (2004). A GFP-based assay for rapid screening of compounds affecting ARE-dependent mRNA turnover. Nucleic Acids Research, 32(11), e89.

Gherzi, Roberto; Lee, Kyung-Yeol; Briata, Paola; Wegmüller, Daniel; Moroni, Christoph; Karin, Michael; Chen, Ching-Yi (2004). A KH domain RNA binding protein, KSRP, promotes ARE-directed mRNA turnover by recruiting the degradation machinery. Molecular cell, 14(5), 571-83.

Raineri, I.; Wegmueller, D.; Gross, B.; Certa, U.; Moroni, C. (2004). Roles of AUF1 isoforms, HuR and BRF1 in ARE-dependent mRNA turnover studied by RNA interference. Nucleic Acids Research, 32(4), 1279-88.

Schmidlin, Martin; Lu, Min; Leuenberger, Sabrina A; Stoecklin, Georg; Mallaun, Michel; Gross, Brigitte; Gherzi, Roberto; Hess, Daniel; Hemmings, Brian A; Moroni, Christoph (2004). The ARE-dependent mRNA-destabilizing activity of BRF1 is regulated by protein kinase B. The EMBO journal, 23(24), 4760-9.

Pagano, A.; Crottet, P.; Prescianotto-Baschong, C.; Spiess, M. (2004). In vitro formation of recycling vesicles from endosomes requires adaptor protein-1/clathrin and is regulated by rab4 and the connector rabaptin-5. Molecular Biology of the Cell, 15(11), 4990-5000.

Higy, Marie; Junne, Tina; Spiess, Martin (2004). Topogenesis of membrane proteins at the endoplasmic reticulum. Biochemistry, 43(40), 12716-22.

Beuret, Nicole; Stettler, Hansruedi; Renold, Anja; Rutishauser, Jonas; Spiess, Martin (2004). Expression of regulated secretory proteins is sufficient to generate granule-like structures in constitutively secreting cells. Journal of Biological Chemistry, 279(19), 20242-9.

Friberg, Michael A; Spiess, Martin; Rutishauser, Jonas (2004). Degradation of wild-type vasopressin precursor and pathogenic mutants by the proteasome. Journal of Biological Chemistry, 279(19), 19441-7.

Goder, V.; Junne, T.; Spiess, M. (2004). Sec61p contributes to signal sequence orientation according to the positive-inside rule. Molecular Biology of the Cell, 15(3), 1470-8.

Loewith, R.; Hall, M. N.: TOR signaling in yeast : temporal and spatial control of cell growth, in: Hall, M.N.; Raff, M.; Thomas, G. (Ed.). (2004). Cell growth, New York: Cold Spring Harbor Laboratory Press , S. S. 139-166.

Chan, C.; Paul, R.; Samoray, D.; Amiot, N. C.; Giese, B.; Jenal, U.; Schirmer, T. (2004). Structural basis of activity and allosteric control of diguanylate cyclase. Proceedings of the National Academy of Sciences of the United States of America, 101(49), 17084-17089.

Storici, P; Qiu, J; Schirmer, T; Silverman, RB (2004). Mechanistic crystallography. Mechanism of inactivation of gamma-aminobutyric acid aminotransferase by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid as elucidated by crystallography. Biochemistry, 43(44), 14057-14063.

Paul, Ralf; Weiser, Stefan; Amiot, Nicholas C; Chan, Carmen; Schirmer, Tilman; Giese, Bernd; Jenal, Urs (2004). Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain. Genes & development, 18(6), 715-27.

Storici, Paola; De Biase, Daniela; Bossa, Francesco; Bruno, Stefano; Mozzarelli, Andrea; Peneff, Caroline; Silverman, Richard B.; Schirmer, Tilman (2004). Structures of gamma-aminobutyric acid (GABA) aminotransferase, a pyridoxal 5'-phosphate, and [2Fe-2S] cluster-containing enzyme, complexed with gamma-ethynyl-GABA and with the antiepilepsy drug vigabatrin. Journal of Biological Chemistry, 279(1), 363-73.

Rhomberg, Thomas A; Karlberg, Olof; Mini, Thierry; Zimny-Arndt, Ursula; Wickenberg, Ulrika; Röttgen, Marlene; Jungblut, Peter R; Jenö, Paul; Andersson, Siv G E; Dehio, Christoph (2004). Proteomic analysis of the sarcosine-insoluble outer membrane fraction of the bacterial pathogen Bartonella henselae. Proteomics, 4(10), 3021-33.

Chatenay-Rivauday, C; Cakar, ZP; Jeno, P; Kuzmenko, ES; Fiedler, K (2004). Caveolae : biochemical analysis. Molecular biology reports, 31(2), 67-84.

Ruegg, M. A.; McMahan, U. J.: Agrin, in: (2004). Encyclopedia of Neuroscience, 3rd edition, Amsterdam: Elsevier .

Seelig, A. (2004). Screening for multidrug resistance. Screening, 4, 20-21.

Gatlik-Landwojtowicz, Ewa; Aänismaa, Päivi; Seelig, Anna (2004). The rate of P-glycoprotein activation depends on the metabolic state of the cell. Biochemistry, 43(46), 14840-51.

Green, J D; Kreplak, L; Goldsbury, C; Li Blatter, X; Stolz, M; Cooper, G S; Seelig, A; Kistler, J; Aebi, U (2004). Atomic force microscopy reveals defects within mica supported lipid bilayers induced by the amyloidogenic human amylin peptide. Journal of molecular biology, 342(3), 877-87.

Gerebtzoff, Grégori; Li-Blatter, Xiaochun; Fischer, Holger; Frentzel, Adrian; Seelig, Anna (2004). Halogenation of drugs enhances membrane binding and permeation. ChemBioChem, 5(5), 676-84.

Strelkov, Sergei V; Schumacher, Jens; Burkhard, Peter; Aebi, Ueli; Herrmann, Harald (2004). Crystal structure of the human lamin A coil 2B dimer: implications for the head-to-tail association of nuclear lamins. Journal of molecular biology, 343(4), 1067-80.

Grünenfelder, Björn; Tawfilis, Sherif; Gehrig, Stefanie; ØSterås, Magne; Eglin, Daniel; Jenal, Urs (2004). Identification of the protease and the turnover signal responsible for cell cycle-dependent degradation of the Caulobacter FliF motor protein. Journal of bacteriology, 186(15), 4960-71.

Jenal, U. (2004). Cyclic di-guanosine-monophosphate comes of age : a novel secondary messenger involved in modulating cell surface structures in bacteria?. Current Opinion in Microbiology, 7(2), 185-91.

Nordheim, Ulrich; Hofbauer, Karl G (2004). Stimulation of NPY Y2 receptors by PYY3-36 reveals divergent cardiovascular effects of endogenous NPY in rats on different dietary regimens. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology, 286(1), R138-42.

Grzesiek, S; Cordier, F; Jaravine, V; Barfield, M (2004). Insights into biomolecular hydrogen bonds from hydrogen bond scalar couplings. Progress in nuclear magnetic resonance spectroscopy, 45(3-4), 275-300.

Meier, Sebastian; Häussinger, Daniel; Pokidysheva, Elena; Bächinger, Hans Peter; Grzesiek, Stephan (2004). Determination of a high-precision NMR structure of the minicollagen cysteine rich domain from Hydra and characterization of its disulfide bond formation. FEBS letters, 569(1-3), 112-6.

Jensen, P.; Sass, H. -J.; Grzesiek, S. (2004). Improved detection of long-range residual dipolar couplings in weakly aligned samples by Lee-Goldburg decoupling of homonuclear dipolar truncation. Journal of Biomolecular NMR, 30(4), 443-50.

Meier, Sebastian; Güthe, Sarah; Kiefhaber, Thomas; Grzesiek, Stephan (2004). Foldon, the natural trimerization domain of T4 fibritin, dissociates into a monomeric A-state form containing a stable beta-hairpin : atomic details of trimer dissociation and local beta-hairpin stability from residual dipolar couplings. Journal of molecular biology, 344(4), 1051-69.

Cordier, Florence; Grzesiek, Stephan (2004). Quantitative comparison of the hydrogen bond network of A-state and native ubiquitin by hydrogen bond scalar couplings. Biochemistry, 43(35), 11295-301.

Pokidysheva, Elena; Milbradt, Alexander G; Meier, Sebastian; Renner, Christian; Häussinger, Daniel; Bächinger, Hans Peter; Moroder, Luis; Grzesiek, Stephan; Holstein, Thomas W; Ozbek, Suat; Engel, Jürgen (2004). The structure of the Cys-rich terminal domain of Hydra minicollagen, which is involved in disulfide networks of the nematocyst wall. Journal of biological chemistry, 279(29), 30395-401.

Jaravine, V. A.; Cordier, F.; Grzesiek, S. (2004). Quantification of H/D isotope effects on protein hydrogen-bonds by h3JNC' and 1JNC' couplings and peptide group 15N and 13C' chemical shifts. Journal of Biomolecular NMR, 29(3), 309-18.

Häussinger, Daniel; Ahrens, Thomas; Aberle, Thomas; Engel, Jürgen; Stetefeld, Jörg; Grzesiek, Stephan (2004). Proteolytic E-cadherin activation followed by solution NMR and X-ray crystallography. The EMBO journal, 23(8), 1699-708.

Ribeiro, Carlos; Neumann, Marc; Affolter, Markus (2004). Genetic control of cell intercalation during tracheal morphogenesis in Drosophila. Current biology, 14(24), 2197-207.

Pyrowolakis, George; Hartmann, Britta; Müller, Bruno; Basler, Konrad; Affolter, Markus (2004). A simple molecular complex mediates widespread BMP-induced repression during Drosophila development. Developmental cell, 7(2), 229-40.

Petit, Valérie; Nussbaumer, Ute; Dossenbach, Caroline; Affolter, Markus (2004). Downstream-of-FGFR is a fibroblast growth factor-specific scaffolding protein and recruits Corkscrew upon receptor activation. Molecular and cellular biology, 24(9), 3769-81.

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