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Dean, Camin; Scheiffele, Peter (2009). Imaging synaptogenesis by measuring accumulation of synaptic proteins. Cold Spring Harbor Protocols, 2009(11), pdb.prot5315.

Zhu, Peixin; Narita, Yuichi; Bundschuh, Sebastian T; Fajardo, Otto; Schärer, Yan-Ping Zhang; Chattopadhyaya, Bidisha; Bouldoires, Estelle Arn; Stepien, Anna Ewa; Deisseroth, Karl; Arber, Silvia; Sprengel, Rolf; Rijli, Filippo M; Friedrich, Rainer W (2009). Optogenetic Dissection of Neuronal Circuits in Zebrafish using Viral Gene Transfer and the Tet System. Frontiers in Neural Circuits, 3, 21.

Frenkiel-Krispin, Daphna; Maco, Bohumil; Aebi, Ueli; Medalia, Ohad (2009). Structural Analysis of a Metazoan Nuclear Pore Complex Reveals of Fused Concentric Ring Architecture. Journal of molecular biology, 395(3), 578-86.

Bumann, D.; Behre, C.; Behre, K.; Herz, S.; Gewecke, B.; Gessner, J. E.; von Specht, B. U.; Baumann, U. (2009). Systemic, nasal and oral live vaccines against Pseudomonas aeruginosa : a clinical trial of immunogenicity in lower airways of human volunteers. Vaccine, 28(3), 707-13.

Affolter, Markus; Zeller, Rolf; Caussinus, Emmanuel (2009). Tissue remodelling through branching morphogenesis. Nature reviews. Molecular cell biology, 10(12), 831-42.

Izergina, Natalya; Balmer, Jasmin; Bello, Bruno; Reichert, Heinrich (2009). Postembryonic development of transit amplifying neuroblast lineages in the Drosophila brain. Neural development, 4(1), 44.

Risson, Valérie; Mazelin, Laetitia; Roceri, Mila; Sanchez, Hervé; Moncollin, Vincent; Corneloup, Claudine; Richard-Bulteau, Hélène; Vignaud, Alban; Baas, Dominique; Defour, Aurélia; Freyssenet, Damien; Tanti, Jean-François; Le-Marchand-Brustel, Yannick; Ferrier, Bernard; Conjard-Duplany, Agnès; Romanino, Klaas; Bauché, Stéphanie; Hantaï, Daniel; Mueller, Matthias; Kozma, Sara C; Thomas, George; Rüegg, Markus A; Ferry, Arnaud; Pende, Mario; Bigard, Xavier; Koulmann, Nathalie; Schaeffer, Laurent; Gangloff, Yann-Gaël (2009). Muscle inactivation of mTOR causes metabolic and dystrophin defects leading to severe myopathy. The Journal of cell biology, 187(6), 859-74.

Kolassa, Iris-Tatjana; Kolassa, Stephan; Ertl, Verena; Papassotiropoulos, Andreas; De Quervain, Dominique J.-F. (2009). The Risk of Posttraumatic Stress Disorder After Trauma Depends on Traumatic Load and the Catechol-O-Methyltransferase Val(158)Met Polymorphism. Biological Psychiatry, 67(4), 304-308.

Byun, Reine; Becskei, Attila (2009). Biology inspires engineering. Genome Biology, 10(11), 317.

Marković-Housley, Zora; Basle, Arnaud; Padavattan, Sivaraman; Maderegger, Bernhard; Schirmer, Tilman; Hoffmann-Sommergruber, Karin (2009). Structure of the major carrot allergen Dau c 1. Acta crystallographica. Section D, Biological crystallography, 65(Pt 11), 1206-12.

Groves, Eleanor; Rittinger, Katrin; Amstutz, Marlise; Berry, Sara; Holden, David W; Cornelis, Guy R; Caron, Emmanuelle (2009). Sequestering of Rac by the Yersinia effector YopO blocks Fcgamma receptor-mediated phagocytosis. Journal of Biological Chemistry, 285(6), 4087-98.

Raschle, Thomas; Hiller, Sebastian; Yu, Tsyr-Yan; Rice, Amanda J.; Walz, Thomas; Wagner, Gerhard (2009). Structural and functional characterization of the integral membrane protein VDAC-1 in lipid bilayer nanodiscs. The journal of the American Chemical Society, 131(49), 17777-9.

Kobialka, Szymon; Beuret, Nicole; Ben-Tekaya, Houchaima; Spiess, Martin (2009). Glycosaminoglycan chains affect exocytic and endocytic protein traffic. Traffic, 10(12), 1845-55.

Nigg, Erich A; Raff, Jordan W (2009). Centrioles, centrosomes, and cilia in health and disease. Cell, 139(4), 663-78.

Sturgill, T. W.; Hall, M. N. (2009). Activating Mutations in TOR Are in Similar Structures As Oncogenic Mutations in PI3KCalpha. ACS Chemical Biology, 4(12), 999-1015.

Lu, Benson C; Cebrian, Cristina; Chi, Xuan; Kuure, Satu; Kuo, Richard; Bates, Carlton M; Arber, Silvia; Hassell, John; MacNeil, Lesley; Hoshi, Masato; Jain, Sanjay; Asai, Naoya; Takahashi, Masahide; Schmidt-Ott, Kai M; Barasch, Jonathan; D'Agati, Vivette; Costantini, Frank (2009). Etv4 and Etv5 are required downstream of GDNF and Ret for kidney branching morphogenesis. Nature Genetics, 41(12), 1295-302.

Cybulski, N.; Hall, M. N. (2009). TOR complex 2: a signaling pathway of its own. Trends in Biochemical Sciences, 34(12), 620-627.

Cybulski, N.; Hall, M. N. (2009). TOR complex 2 : a signaling pathway of its own. Trends in Biochemical Sciences, 34(12), 620-7.

Hamaratoglu, Fisun; Basler, Konrad; Affolter, Markus (2009). Confronting morphogen gradients : how important are they for growth?. Science Signaling, 2(94), pe67.

Aregger, Regula; Klostermeier, Dagmar (2009). The Dead Box Helicase YxiN Maintains a Closed Conformation during ATP Hydrolysis. Biochemistry, 48(45), 10679-81.

Affolter, Markus; Zeller, Rolf (2009). From cells to organs : new insight into organ morphogenesis. Current opinion in genetics & development, 19(5), 421-3.

Rasch, B.; Spalek, K.; Buholzer, S.; Luechinger, R.; Boesiger, P.; Papassotiropoulos, A.; de Quervain, D. J.-F. (2009). A genetic variation of the noradrenergic system is related to differential amygdala activation during encoding of emotional memories. Proceedings of the National Academy of Sciences of the United States of America, 106(45), 19191-19196.

Farhan, Hesso; Hauri, Hans-Peter (2009). Membrane biogenesis : networking at the ER with atlastin. Current biology, 19(19), R906-8.

Birk, Julia; Friberg, Michael A; Prescianotto-Baschong, Cristina; Spiess, Martin; Rutishauser, Jonas (2009). Dominant pro-vasopressin mutants that cause diabetes insipidus form disulfide-linked fibrillar aggregates in the endoplasmic reticulum. Journal of cell science, 122(Pt 21), 3994-4002.

Gander, Stefan; Martin, Dietmar; Hauri, Simon; Moes, Suzette; Poletto, Giorgia; Pagano, Mario A; Marin, Oriano; Meggio, Flavio; Jenoe, Paul (2009). A Modified KESTREL Search Reveals a Basophilic Substrate Consensus for the Saccharomyces cerevisiae Npr1 Protein Kinase. Journal of Proteome Research, 8(11), 5305-16.

Tan, Kelly R.; Baur, Roland; Charon, Sébastien; Goeldner, Maurice; Sigel, Erwin (2009). Relative positioning of diazepam in the benzodiazepine-binding-pocket of GABA receptors. Journal of Neurochemistry, 111(5), 1264-73.

Wirth, Christophe; Condemine, Guy; Boiteux, Céline; Bernèche, Simon; Schirmer, Tilman; Peneff, Caroline M (2009). NanC crystal structure, a model for outer-membrane channels of the acidic sugar-specific KdgM porin family. Journal of molecular biology, 394(4), 718-31.

Häussinger, Daniel; Huang, Jie-rong; Grzesiek, Stephan (2009). DOTA-M8 : an extremely rigid, high-affinity lanthanide chelating tag for PCS NMR spectroscopy. Journal of the American Chemical Society, 131(41), 14761-7.

Pasutto, Francesca; Matsumoto, Tomoya; Mardin, Christian Y; Sticht, Heinrich; Brandstätter, Johann H; Michels-Rautenstrauss, Karin; Weisschuh, Nicole; Gramer, Eugen; Ramdas, Wishal D; van Koolwijk, Leonieke M E; Klaver, Caroline C W; Vingerling, Johannes R; Weber, Bernhard H F; Kruse, Friedrich E; Rautenstrauss, Bernd; Barde, Yves-Alain; Reis, André (2009). Heterozygous NTF4 mutations impairing neurotrophin-4 signaling in patients with primary open-angle glaucoma. American journal of human genetics, 85(4), 447-56.

Zavolan, Mihaela (2009). Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets. Genome research, 19(11), 2009-20.

Soulard, A.; Cohen, A.; Hall, M. N. (2009). TOR signaling in invertebrates. Current Opinion in Cell Biology, 21(6), 825-836.

Kumar, Abhilasha; Bello, Bruno; Reichert, Heinrich (2009). Lineage-specific cell death in postembryonic brain development of Drosophila. Development, 136(20), 3433-42.

Erb, M.; Meinen, S.; Barzaghi, P.; Sumanovski, L. T.; Courdier-Fruh, I.; Ruegg, M. A.; Meier, T. (2009). Omigapil ameliorates the pathology of muscle dystrophy caused by laminin-α2 deficiency. Journal of pharmacology and experimental therapeutics, 331(3), 787-95.

Schirmer, Tilman; Jenal, Urs (2009). Structural and mechanistic determinants of c-di-GMP signalling. Nature Reviews Microbiology, 7(10), 724-35.

DeVay, Rachel M; Dominguez-Ramirez, Lenin; Lackner, Laura L; Hoppins, Suzanne; Stahlberg, Henning; Nunnari, Jodi (2009). Coassembly of Mgm1 isoforms requires cardiolipin and mediates mitochondrial inner membrane fusion. The Journal of cell biology, 186(6), 793-803.

Hilbert, M.; Karow, A. R.; Klostermeier, D. (2009). The mechanism of ATP-dependent RNA unwinding by DEAD box proteins. Biological Chemistry, 390(12), 1237-1250.

Jensen, M. R.; Markwick, P. R. L.; Meier, S.; Griesinger, C.; Zweckstetter, M.; Grzesiek, S.; Bernado, P.; Blackledge, M. (2009). Quantitative determination of the conformational properties of partially folded and intrinsically disordered proteins using NMR dipolar couplings. Structure, 17(9), 1169-85.

Hiller, Sebastian; Ibraghimov, Ilghis; Wagner, Gerhard; Orekhov, Vladislav Y. (2009). Coupled decomposition of four-dimensional NOESY spectra. The journal of the American Chemical Society, 131(36), 12970-8.

Baer, Magdalena M; Chanut-Delalande, Helene; Affolter, Markus (2009). Cellular and molecular mechanisms underlying the formation of biological tubes. Current topics in developmental biology, 89, 137-62.

Bumann, Dirk (2009). System-level analysis of Salmonella metabolism during infection. Current Opinion in Microbiology, 12(5), 559-67.

Pick, Horst; Etter, Sylvain; Baud, Olivia; Schmauder, Ralf; Bordoli, Lorenza; Schwede, Torsten; Vogel, Horst (2009). Dual activities of odorants on olfactory and nuclear hormone receptors. Journal of biological chemistry, 284(44), 30547-55.

Hänisch, J.; Ehinger, J.; Ladwein, M.; Rohde, M.; Derivery, E.; Bosse, T.; Steffen, A.; Bumann, D.; Misselwitz, B.; Hardt, W. D.; Gautreau, A.; Stradal, T. E.; Rottner, K. (2009). Molecular dissection of Salmonella-induced membrane ruffling versus invasion. Cellular Microbiology, 12(1), 84-98.

Grzesiek, S.; Sass, H. J. (2009). From biomolecular structure to functional understanding : new NMR developments narrow the gap. Current Opinion in Structural Biology, 19(5), 585-595.

Kumar, Abhilasha; Fung, S; Lichtneckert, Robert; Reichert, Heinrich; Hartenstein, Volker (2009). Arborization pattern of engrailed-positive neural lineages reveal neuromere boundaries in the Drosophila brain neuropil. Journal of comparative neurology, 517(1), 87-104.

Rudolph, Markus G; Klostermeier, Dagmar (2009). The Thermus thermophilus DEAD box helicase Hera contains a modified RNA recognition motif domain loosely connected to the helicase core. RNA, 15(11), 1993-2001.

Klein, Ulf R.; Nigg, Erich A. (2009). SUMO-dependent regulation of centrin-2. Journal of cell science, 122(18), 3312-3321.

Benkert, Pascal; Tosatto, Silvio C E; Schwede, Torsten (2009). Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust. Proteins, 77 Suppl 9(S9), 173-80.

Engel, P.; Dehio, C. (2009). Genomics of Host-Restricted Pathogens of the Genus Bartonella. Genome dynamics, 6, 158-69.

Malik, Rainer; Lenobel, René; Santamaria, Anna; Ries, Albert; Nigg, Erich A; Körner, Roman (2009). Quantitative analysis of the human spindle phosphoproteome at distinct mitotic stages. Journal of Proteome Research, 8(10), 4553-63.

Buetti-Dinh, Antoine; Ungricht, Rosemarie; Kelemen, János Z.; Shetty, Chetak; Ratna, Prasuna; Becskei, Attila (2009). Control and signal processing by transcriptional interference. Molecular Systems Biology, 5, 300.

Hutzinger, R.; Feederle, R.; Mrazek, J.; Schiefermeier, N.; Balwierz, P. J.; Zavolan, M.; Polacek, N.; Delecluse, H. -J.; Huttenhofer, A. (2009). Expression and processing of a small nucleolar RNA from the Epstein-Barr virus genome. PLoS Pathogens, 5(8), e1000547.

Handschin, Christoph (2009). Peroxisome proliferator-activated receptor-γ coactivator-1α in muscle links metabolism to inflammation. Clinical and experimental pharmacology and physiology, 36(12), 1139-43.

Gubaev, Airat; Hilbert, Manuel; Klostermeier, Dagmar (2009). The DNA-gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction. Proceedings of the National Academy of Sciences of the United States of America, 106(32), 13278-83.

Hiller, Sebastian; Wagner, Gerhard (2009). The role of solution NMR in the structure determinations of VDAC-1 and other membrane proteins. Current opinion in structural biology, 19(4), 396-401.

Scherr, Nicole; Jayachandran, Rajesh; Mueller, Philipp; Pieters, Jean (2009). Interference of Mycobacterium tuberculosis with macrophage responses. Indian Journal of Experimental Biology, 47(6), 401-6.

de Buhr, M. F.; Hedrich, H. J.; Westendorf, A. M.; Obermeier, F.; Hofmann, C.; Zschemisch, N. H.; Buer, J.; Bumann, D.; Goyert, S. M.; Bleich, A. (2009). Analysis of Cd14 as a genetic modifier of experimental inflammatory bowel disease (IBD) in mice. Inflammatory Bowel Diseases, 15(12), 1824-36.

Huze, C.; Bauche, S.; Richard, P.; Chevessier, F.; Goillot, E.; Gaudon, K.; Ben Ammar, A.; Chaboud, A.; Grosjean, I.; Lecuyer, H. -A.; Bernard, V.; Rouche, A.; Alexandri, N.; Kuntzer, T.; Fardeau, M.; Fournier, E.; Brancaccio, A.; Ruegg, M. A.; Koenig, J.; Eymard, B.; Schaeffer, L.; Hantai, D. (2009). Identification of an agrin mutation that causes congenital myasthenia and affects synapse function. American Journal of Human Genetics, 85(2), 155-67.

Li-Blatter, Xiaochun; Nervi, Pierluigi; Seelig, Anna (2009). Detergents as intrinsic P-glycoprotein substrates and inhibitors. Biochimica et biophysica acta, 1788(10), 2335-44.

Doe, Chris Q. (2009). Apical/basal spindle orientation is required for neuroblast homeostasis and neuronal differentiation in Drosophila. Developmental cell, 17(1), 134-41.

Holtmaat, Anthony; Bonhoeffer, Tobias; Chow, David K.; Chuckowree, Jyoti; De Paola, Vincenzo; Hofer, Sonja B.; Hübener, Mark; Keck, Tara; Knott, Graham; Lee, Wei-Chung A.; Mostany, Ricardo; Mrsic-Flogel, Tom D.; Nedivi, Elly; Portera-Cailliau, Carlos; Svoboda, Karel; Trachtenberg, Joshua T.; Wilbrecht, Linda (2009). Long-term, high-resolution imaging in the mouse neocortex through a chronic cranial window. Nature Protocols, 4(8), 1128-44.

Kroger, R. H. H.; Biehlmaier, O. (2009). Space-saving advantage of an inverted retina. Vision Research, 49(18), 2318-21.

San Paolo, Salvatore; Vanacova, Stepanka; Schenk, Luca; Scherrer, Tanja; Blank, Diana; Keller, Walter; Gerber, André P (2009). Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genetics, 5(7), e1000555.

Llosa, Matxalen; Roy, Craig; Dehio, Christoph (2009). Bacterial type IV secretion systems in human disease. Molecular microbiology, 73(2), 141-51.

Vogler, Christian; Spalek, Klara; Aerni, Amanda; Demougin, Philippe; Müller, Ariane; Huynh, Kim-Dung; Papassotiropoulos, Andreas; de Quervain, Dominique J.-F. (2009). CPEB3 is associated with human episodic memory. Frontiers in behavioral neuroscience, 3(4)

Handschin, C (2009). PGC-1a in muscle links metabolism to inflammation. Proceedings of the Australian Physiological Society, 40, 11-16.

Hayley, Michael; Perspicace, Samantha; Schulthess, Therese; Seelig, Joachim (2009). Calcium enhances the proteolytic activity of BACE1 : an in vitro biophysical and biochemical characterization of the BACE1-calcium interaction. Biochimica et biophysica acta, 1788(9), 1933-8.

Karow, A. R.; Klostermeier, D. (2009). A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN. Nucleic Acids Research, 37(13), 4464-4471.

Hausser, Jean; Berninger, Philipp; Rodak, Christoph; Jantscher, Yvonne; Wirth, Stefan; Zavolan, Mihaela (2009). MirZ: an integrated microRNA expression atlas and target prediction resource. Nucleic Acids Research, 37(Web Server issue), W266-72.

Shrive, Annette K; Burns, Ian; Chou, Hui-Ting; Stahlberg, Henning; Armstrong, Peter B; Greenhough, Trevor J (2009). Crystal Structures of Limulus SAP-Like Pentraxin Reveal Two Molecular Aggregations. Journal of molecular biology, 386(5), 1240-54.

Hiller, Sebastian; Arthanari, Haribabu; Wagner, Gerhard (2009). The T-lock: automated compensation of radio-frequency induced sample heating. Journal of biomolecular NMR, 44(2), 69-76.

Benkert, P.; Kunzli, M.; Schwede, T. (2009). QMEAN server for protein model quality estimation. Nucleic Acids Research, 37(Web Server issue), W510-4.

Scheidegger, F; Ellner, Y; Guye, P; Rhomberg, T A; Weber, H; Augustin, H G; Dehio, C (2009). Distinct activities of Bartonella henselae type IV secretion effector proteins modulate capillary-like sprout formation. Cellular Microbiology, 11(7), 1088-101.

Vojtova-Vodolanova, Jana; Basler, Marek; Osicka, Radim; Knapp, Oliver; Maier, Elke; Cerny, Jan; Benada, Oldrich; Benz, Roland; Sebo, Peter (2009). Oligomerization is involved in pore formation by Bordetella adenylate cyclase toxin. FASEB Journal, 23(9), 2831-43.

Neher, Richard A.; Mitkovski, Miso; Kirchhoff, Frank; Neher, Erwin; Theis, Fabian J.; Zeug, André (2009). Blind source separation techniques for the decomposition of multiply labeled fluorescence images. Biophysical Journal, 96(9), 3791-800.

Kaufmann, Andreas (2009). A plasmid collection for PCR-based gene targeting in the filamentous ascomycete Ashbya gossypii. Fungal Genetics and Biology, 46(8), 595-603.

Iinuma, Takayuki; Aoki, Takehiro; Arasaki, Kohei; Hirose, Hidenori; Yamamoto, Akitsugu; Samata, Rie; Hauri, Hans-Peter; Arimitsu, Nagisa; Tagaya, Mitsuo; Tani, Katsuko (2009). Role of syntaxin 18 in the organization of endoplasmic reticulum subdomains. Journal of cell science, 122(Pt 10), 1680-90.

Bottova, I.; Hehl, A. B.; Stefanic, S.; Fabrias, G.; Casas, J.; Schraner, E.; Pieters, J.; Sonda, S. (2009). Host cell P-glycoprotein is essential for cholesterol uptake and replication of Toxoplasma gondii. Journal of biological chemistry, 284(26), 17438-48.

Selbach, Matthias; Paul, Florian Ernst; Brandt, Sabine; Guye, Patrick; Daumke, Oliver; Backert, Steffen; Dehio, Christoph; Mann, Matthias (2009). Host cell interactome of tyrosine-phosphorylated bacterial proteins. Cell Host & Microbe, 5(4), 397-403.

Blagosklonny, M. V.; Hall, M. N. (2009). Growth and aging: a common molecular mechanism. Aging, 1(4), 357-362.

Blagosklonny, Mikhail V; Hall, Michael N (2009). Growth and aging : a common molecular mechanism. Aging, 1(4), 357-62.

Neher, Richard A.; Shraiman, Boris I. (2009). Competition between recombination and epistasis can cause a transition from allele to genotype selection. Proceedings of the National Academy of Sciences, 106(16), 6866-71.

Pastrana, Erika; Cheng, Li-Chun; Doetsch, Fiona (2009). Simultaneous prospective purification of adult subventricular zone neural stem cells and their progeny. Proceedings of the National Academy of Sciences, 106(15), 6387-92.

Rhomberg, Thomas A; Truttmann, Matthias C; Guye, Patrick; Ellner, Yvonne; Dehio, Christoph (2009). A translocated protein of Bartonella henselae interferes with endocytic uptake of individual bacteria and triggers uptake of large bacterial aggregates via the invasome. Cellular Microbiology, 11(6), 927-45.

Shin, Hwain; Mally, Manuela; Meyer, Salome; Fiechter, Chantal; Paroz, Cécile; Zaehringer, Ulrich; Cornelis, Guy R (2009). Resistance of Capnocytophaga canimorsus to killing by human complement and polymorphonuclear leukocytes. Infection and immunity, 77(6), 2262-71.

Grieder, Nicole C; Morata, Gines; Affolter, Markus; Gehring, Walter J (2009). Spalt major controls the development of the notum and of wing hinge primordia of the Drosophila melanogaster wing imaginal disc. Developmental biology, 329(2), 315-26.

Becskei, Attila (2009). Linearization through distortion: a new facet of negative feedback in signalling. Molecular Systems Biology, 5, 255.

Poy, Matthew N; Hausser, Jean; Trajkovski, Mirko; Braun, Matthias; Collins, Stephan; Rorsman, Patrik; Zavolan, Mihaela; Stoffel, Markus (2009). miR-375 maintains normal pancreatic alpha- and beta-cell mass. Proceedings of the National Academy of Sciences of the United States of America, 106(14), 5813-8.

Chomel, B. B.; Boulouis, H. -J.; Breitschwerdt, E. B.; Kasten, R. W.; Vayssier-Taussat, M.; Birtles, R. J.; Koehler, J. E.; Dehio, C. (2009). Ecological fitness and strategies of adaptation of Bartonella species to their hosts and vectors. Veterinary Research, 40(2), 29.

Hoerndli, Frédéric J.; Walser, Michael; Fröhli Hoier, Erika; de Quervain, Dominique; Papassotiropoulos, Andreas; Hajnal, Alex (2009). A conserved function of C. elegans CASY-1 calsyntenin in associative learning. PLoS ONE, 4(3), e4880.

Cheng, Li-Chun; Pastrana, Erika; Tavazoie, Masoud; Doetsch, Fiona (2009). miR-124 regulates adult neurogenesis in the subventricular zone stem cell niche. Nature Neuroscience, 12(4), 399-408.

Nguyen, L.; Pieters, J. (2009). Mycobacterial subversion of chemotherapeutic reagents and host defense tactics : challenges in tuberculosis drug development. Annual review of pharmacology and toxicology, 49, 427-53.

Schroeder, U.; Graff, A.; Buchmeieer, S.; Rigler, P.; Silvan, U.; Tropel, D.; Jockusch, B.; Aebi, U.; Burckhard, P.; Schoenenberger, C.A. (2009). Peptide nanoparticles serve as apowerful platform for the immunogenic display of poorly antigenic actin determinants. Journal of molecular biology, 386(5), 1368-1381.

Polak, P.; Hall, M. N. (2009). mTOR and the control of whole body metabolism. Current Opinion in Cell Biology, 21(2), 209-218.

Leiman, Petr G.; Basler, Marek; Ramagopal, Udupi A.; Bonanno, Jeffrey B.; Sauder, J. Michael; Pukatzki, Stefan; Burley, Stephen K.; Almo, Steven C.; Mekalanos, John J. (2009). Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proceedings of the National Academy of Sciences, 106(11), 4154-9.

Combaluzier, B.; Pieters, J. (2009). Chemotaxis and phagocytosis in neutrophils is independent of coronin 1. Journal of immunology, 182(5), 2745-52.

Harrington, John M; Chou, Hui-Ting; Gutsmann, Thomas; Gelhaus, Christoph; Stahlberg, Henning; Leippe, Matthias; Armstrong, Peter B (2009). Membrane activity of a C-reactive protein. FEBS letters, 583(6), 1001-5.

Ratna, Prasuna; Scherrer, Simone; Fleischli, Christoph; Becskei, Attila (2009). Synergy of repression and silencing gradients along the chromosome. Journal of Molecular Biology, 387(4), 826-39.

Houben, E. N. G.; Walburger, A.; Ferrari, G.; Nguyen, L.; Thompson, C. J.; Miess, C.; Vogel, G.; Mueller, B.; Pieters, J. (2009). Differential expression of a virulence factor in pathogenic and non-pathogenic mycobacteria. Molecular Microbiology, 72(1), 41-52.

Willmann, Raffaella; Possekel, Stefanie; Dubach-Powell, Judith; Meier, Thomas; Rüegg, Markus A. (2009). Mammalian animal models for Duchenne muscular dystrophy. Neuromuscular Disorders, 19(4), 241-9.

Combaluzier, Benoit; Mueller, Philipp; Massner, Jan; Finke, Daniela; Pieters, Jean (2009). Coronin 1 is essential for IgM-mediated Ca2+ mobilization in B cells but dispensable for the generation of immune responses in vivo. Journal of immunology, 182(4), 1954-61.

Cohen, A.; Hall, M. N. (2009). An amino acid shuffle activates mTORC1. Cell, 136(3), 399-401.

Klocek, Gabriela; Schulthess, Therese; Shai, Yechiel; Seelig, Joachim (2009). Thermodynamics of melittin binding to lipid bilayers. Aggregation and pore formation. Biochemistry, 48(12), 2586-96.

Touchon, Marie; Hoede, Claire; Tenaillon, Olivier; Barbe, Valérie; Baeriswyl, Simon; Bidet, Philippe; Bingen, Edouard; Bonacorsi, Stéphane; Bouchier, Christiane; Bouvet, Odile; Calteau, Alexandra; Chiapello, Hélène; Clermont, Olivier; Cruveiller, Stéphane; Danchin, Antoine; Diard, Médéric; Dossat, Carole; Karoui, Meriem El; Frapy, Eric; Garry, Louis; Ghigo, Jean Marc; Gilles, Anne Marie; Johnson, James; Le Bouguénec, Chantal; Lescat, Mathilde; Mangenot, Sophie; Martinez-Jéhanne, Vanessa; Matic, Ivan; Nassif, Xavier; Oztas, Sophie; Petit, Marie Agnès; Pichon, Christophe; Rouy, Zoé; Ruf, Claude Saint; Schneider, Dominique; Tourret, Jérôme; Vacherie, Benoit; Vallenet, David; Médigue, Claudine; Rocha, Eduardo P C; Denamur, Erick (2009). Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.. PLoS genetics, 5(1), e1000344.

Kleaveland, Benjamin; Zheng, Xiangjian; Liu, Jian J; Blum, Yannick; Tung, Jennifer J; Zou, Zhiying; Sweeney, Shawn M; Chen, Mei; Guo, Lili; Lu, Min-min; Zhou, Diane; Kitajewski, Jan; Affolter, Markus; Ginsberg, Mark H; Kahn, Mark L (2009). Regulation of cardiovascular development and integrity by the heart of glass-cerebral cavernous malformation protein pathway. Nature medicine, 15(2), 169-76.

Stroud, Robert M; Choe, Senyon; Holton, James; Kaback, H Ronald; Kwiatkowski, Witek; Minor, Daniel L; Riek, Roland; Sali, Andrej; Stahlberg, Henning; Harries, William (2009). 2007 annual progress report synopsis of the Center for Structures of Membrane Proteins. Journal of structural and functional genomics, 10(2), 193-208.

Jayachandran, R.; Scherr, N.; Pieters, J. (2009). Analyzing the interaction of pathogens with the host immune system. Immunology letters, 122(2), 112-4.

Pena, John T G; Sohn-Lee, Cherin; Rouhanifard, Sara H; Ludwig, Janos; Hafner, Markus; Mihailovic, Aleksandra; Lim, Cindy; Holoch, Daniel; Berninger, Philipp; Zavolan, Mihaela; Tuschl, Thomas (2009). miRNA in situ hybridization in formaldehyde and EDC-fixed tissues. Nature Methods, 6(2), 139-41.

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Kaufmann, Andreas; Philippsen, Peter (2009). Of bars and rings : Hof1-dependent cytokinesis in multiseptated hyphae of Ashbya gossypii. Molecular and cellular biology, 29(3), 771-83.

Pulliainen, Arto Tapio; Dehio, Christoph (2009). Bartonella henselae : subversion of vascular endothelial cell functions by translocated bacterial effector proteins. The international journal of biochemistry & cell biology, 41(3), 507-10.

Hofer, Sonja B.; Mrsic-Flogel, Thomas D.; Bonhoeffer, Tobias; Hübener, Mark (2009). Experience leaves a lasting structural trace in cortical circuits. Nature, 457(7227), 313-7.

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Malmström, Johan; Beck, Martin; Schmidt, Alexander; Lange, Vinzenz; Deutsch, Eric W.; Aebersold, Ruedi (2009). Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans. Nature, 460(7256), 762-5.

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Jastrzebska, Beata; Golczak, Marcin; Fotiadis, Dimitrios; Engel, Andreas; Palczewski, Krzysztof (2009). Isolation and functional characterization of a stable complex between photoactivated rhodopsin and the G protein, transducin. The FASEB journal, 23(2), 371-81.

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Neuweiler, Hannes; Sharpe, Timothy D.; Rutherford, Trevor J.; Johnson, Christopher M.; Allen, Mark D.; Ferguson, Neil; Fersht, Alan R. (2009). The folding mechanism of BBL: Plasticity of transition-state structure observed within an ultrafast folding protein family. Journal of Molecular Biology, 390(5), 1060-1073.

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Gajendran, N.; Kapfhammer, J. P.; Lain, E.; Canepari, M.; Vogt, K.; Wisden, W.; Brenner, H. R. (2009). Neuregulin signaling is dispensable for NMDA- and GABA(A)-receptor expression in the cerebellum in vivo. Journal of Neuroscience, 29(8), 2404-13.

Hamaratoglu, Fisun; Gajewski, Kathleen; Sansores-Garcia, Leticia; Morrison, Clayton; Tao, Chunyao; Halder, Georg (2009). The Hippo tumor-suppressor pathway regulates apical-domain size in parallel to tissue growth. Journal of cell science, 122(Pt 14), 2351-9.

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Lang, C.; Grava, S.; van den Hoorn, T.; Trimble, R.; Philippsen, P.; Jaspersen, S. L. (2009). Mobility, Microtubule Nucleation and Structure of MTOCs in Multinucleated Hyphae of Ashbya gossypii. Molecular Biology of the Cell, 21(1), 18-28.

Boehm, Alex; Steiner, Samuel; Zaehringer, Franziska; Casanova, Alain; Hamburger, Fabienne; Ritz, Daniel; Keck, Wolfgang; Ackermann, Martin; Schirmer, Tilman; Jenal, Urs (2009). Second messenger signaling governs Escherichia coli biofilm induction upon ribosomal stress. Molecular microbiology, 72(6), 1500-1516.

Padavattan, Sivaraman; Flicker, Sabine; Schirmer, Tilman; Madritsch, Christoph; Randow, Stefanie; Reese, Gerald; Vieths, Stefan; Lupinek, Christian; Ebner, Christof; Valenta, Rudolf; Markovic-Housley, Zora (2009). High-affinity IgE recognition of a conformational epitope of the major respiratory allergen Phl p 2 as revealed by X-ray crystallography. Journal of immunology, 182(4), 2141-51.

Handschin, C. (2009). The biology of PGC-1α and its therapeutic potential. Trends in Pharmacological Sciences, 30(6), 322-329.

Zenhaeusern, G.; Gubser, P.; Eisele, P.; Gasser, O.; Steinhuber, A.; Trampuz, A.; Handschin, C.; Luster, A. D.; Hess, C. (2009). A high-mobility, low-cost phenotype defines human effector-memory CD8+ T cells. Blood, 113(1), 95-99.

Nigg, Erich A. (2009). Stable kinetochore-microtubule interactions depend on the Ska complex and its new component Ska3/C13Orf3. The EMBO journal, 28(10), 1442-52.

Schmidt, Thorsten I; Kleylein-Sohn, Julia; Westendorf, Jens; Le Clech, Mikael; Lavoie, Sébastien B; Stierhof, York-Dieter; Nigg, Erich A (2009). Control of Centriole Length by CPAP and CP110. Current biology, 19(12), 1005-11.

Chan, Ying Wai; Fava, Luca L; Uldschmid, Andreas; Schmitz, Michael H A; Gerlich, Daniel W; Nigg, Erich A; Santamaria, Anna (2009). Mitotic control of kinetochore-associated dynein and spindle orientation by human Spindly. The Journal of cell biology, 185(5), 859-74.

Klein, Ulf R.; Haindl, Markus; Nigg, Erich A.; Muller, Stefan (2009). RanBP2 and SENP3 function in a mitotic SUMO2/3 conjugation-deconjugation cycle on Borealin. Molecular Biology of the Cell, 20(1), 410-8.

Reichert, Heinrich (2009). Evolutionary conservation of mechanisms for neural regionalization, proliferation and interconnection in brain development. Biology letters, 5(1), 112-6.

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Mally, Manuela; Paroz, Cécile; Shin, Hwain; Meyer, Salome; Soussoula, Lavinia V; Schmiediger, Ueli; Saillen-Paroz, Caroline; Cornelis, Guy R (2009). Prevalence of Capnocytophaga canimorsus in dogs and occurrence of potential virulence factors. Microbes and infection, 11(4), 509-14.

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Kiefer, F.; Arnold, K.; Kunzli, M.; Bordoli, L.; Schwede, T. (2009). The Swiss-model Repository and associated resources. Nucleic Acids Research, 37(1 Supplement), D387-D392.

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Bär, Harald; Sharma, Sarika; Kleiner, Helga; Mücke, Norbert; Zentgraf, Hanswalter; Katus, Hugo A; Aebi, Ueli; Herrmann, Harald (2009). Interference of amino-terminal desmin fragments with desmin filament formation. Cell motility and the cytoskeleton, 66(11), 986-99.

Herrmann, H.; Strelkov, S. V.; Burkhard, P.; Aebi, U. (2009). Intermediate filaments : primary determinants of cell architecture and plasticity. Journal of Clinical Investigation, 119(7), 1772-83.

Huang, N.-P.; Stubenrauch, M.; Koeser, J.; Strasser, P.; Taschner, N.; Aebi, U.; Stolz, M. (2009). Towards Watching the Nuclear Pore Complex (NPC) at Work : In Situ Binding of Gold-Conjugated Cargoes to the Nucleoporins Monitored by Time-Lapse Scanning Force Microscopy. Journal of structural biology, submitted(submitted), 154-162.

Kaba, S.A.; Brando, C.; Guo, Q.; Mittelholzer, C.; Raman, S.; Trope, D.; Aebi, U.; Burkhard, P.; Lanar, D.E. (2009). A Non-Adjuvanted Polypeptide Nanoparticle Vaccine Confers Long-Lasting Protection Against Rodent Malaria. Journal of immunology, in press(in press), 7268-7277.

Kayser, Hartmut; Mann, Karlheinz; Machaidze, Gia; Nimtz, Manfred; Ringler, Philippe; Müller, Shirley A; Aebi, Ueli (2009). Isolation, characterisation and molecular imaging of a high-molecular-weight insect biliprotein, a member of the hexameric arylphorin protein family. Journal of molecular biology, 389(1), 74-89.

Ben-Harush, Kfir; Wiesel, Naama; Frenkiel-Krispin, Daphna; Moeller, Dorothee; Soreq, Eyal; Aebi, Ueli; Herrmann, Harald; Gruenbaum, Yosef; Medalia, Ohad (2009). The supramolecular organization of the C. elegans nuclear lamin filament. Journal of molecular biology, 386(5), 1392-402.

Georgakopoulou, Sofia; Möller, Dorothee; Sachs, Nadine; Herrmann, Harald; Aebi, Ueli (2009). Near-UV circular dichroism reveals structural transitions of vimentin subunits during intermediate filament assembly. Journal of molecular biology, 386(2), 544-53.

Schroeder, Ulrich; Graff, Alexandra; Buchmeier, Sabine; Rigler, Per; Silvan, Unai; Tropel, David; Jockusch, Brigitte M; Aebi, Ueli; Burkhard, Peter; Schoenenberger, Cora-Ann (2009). Peptide Nanoparticles Serve as a Powerful Platform for the Immunogenic Display of Poorly Antigenic Actin Determinants. Journal of molecular biology, 386(5), 1368-81.

Balwierz, Piotr J; Carninci, Piero; Daub, Carsten O; Kawai, Jun; Hayashizaki, Yoshihide; Van Belle, Werner; Beisel, Christian; van Nimwegen, Erik (2009). Methods for analyzing deep sequencing expression data : constructing the human and mouse promoterome with deepCAGE data. Genome biology, 10(7), R79.

Molina, Nacho; van Nimwegen, Erik (2009). Scaling laws in functional genome content across prokaryotic clades and lifestyles. Trends in genetics, 25(6), 243-7.

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Severin, Jessica; Waterhouse, Andrew M; Kawaji, Hideya; Lassmann, Timo; van Nimwegen, Erik; Balwierz, Piotr J; de Hoon, Michiel Jl; Hume, David A; Carninci, Piero; Hayashizaki, Yoshihide; Suzuki, Harukazu; Daub, Carsten O; Forrest, Alistair Rr (2009). FANTOM4 EdgeExpressDB: : an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions. Genome biology, 10(4), R39.

FANTOM Consortium; Suzuki, Harukazu; Forrest, Alistair R R; van Nimwegen, Erik; Daub, Carsten O; Balwierz, Piotr J; Irvine, Katharine M; Lassmann, Timo; Ravasi, Timothy; Hasegawa, Yuki; de Hoon, Michiel J L; Katayama, Shintaro; Schroder, Kate; Carninci, Piero; Tomaru, Yasuhiro; Kanamori-Katayama, Mutsumi; Kubosaki, Atsutaka; Akalin, Altuna; Ando, Yoshinari; Arner, Erik; Asada, Maki; Asahara, Hiroshi; Bailey, Timothy; Bajic, Vladimir B; Bauer, Denis; Beckhouse, Anthony G; Bertin, Nicolas; Björkegren, Johan; Brombacher, Frank; Bulger, Erika; Chalk, Alistair M; Chiba, Joe; Cloonan, Nicole; Dawe, Adam; Dostie, Josee; Engström, Pär G; Essack, Magbubah; Faulkner, Geoffrey J; Fink, J Lynn; Fredman, David; Fujimori, Ko; Furuno, Masaaki; Gojobori, Takashi; Gough, Julian; Grimmond, Sean M; Gustafsson, Mika; Hashimoto, Megumi; Hashimoto, Takehiro; Hatakeyama, Mariko; Heinzel, Susanne; Hide, Winston; Hofmann, Oliver; Hörnquist, Michael; Huminiecki, Lukasz; Ikeo, Kazuho; Imamoto, Naoko; Inoue, Satoshi; Inoue, Yusuke; Ishihara, Ryoko; Iwayanagi, Takao; Jacobsen, Anders; Kaur, Mandeep; Kawaji, Hideya; Kerr, Markus C; Kimura, Ryuichiro; Kimura, Syuhei; Kimura, Yasumasa; Kitano, Hiroaki; Koga, Hisashi; Kojima, Toshio; Kondo, Shinji; Konno, Takeshi; Krogh, Anders; Kruger, Adele; Kumar, Ajit; Lenhard, Boris; Lennartsson, Andreas; Lindow, Morten; Lizio, Marina; Macpherson, Cameron; Maeda, Norihiro; Maher, Christopher A; Maqungo, Monique; Mar, Jessica; Matigian, Nicholas A; Matsuda, Hideo; Mattick, John S; Meier, Stuart; Miyamoto, Sei; Miyamoto-Sato, Etsuko; Nakabayashi, Kazuhiko; Nakachi, Yutaka; Nakano, Mika; Nygaard, Sanne; Okayama, Toshitsugu; Okazaki, Yasushi; Okuda-Yabukami, Haruka; Orlando, Valerio; Otomo, Jun; Pachkov, Mikhail; Petrovsky, Nikolai; Plessy, Charles; Quackenbush, John; Radovanovic, Aleksandar; Rehli, Michael; Saito, Rintaro; Sandelin, Albin; Schmeier, Sebastian; Schönbach, Christian; Schwartz, Ariel S; Semple, Colin A; Sera, Miho; Severin, Jessica; Shirahige, Katsuhiko; Simons, Cas; St Laurent, George; Suzuki, Masanori; Suzuki, Takahiro; Sweet, Matthew J; Taft, Ryan J; Takeda, Shizu; Takenaka, Yoichi; Tan, Kai; Taylor, Martin S; Teasdale, Rohan D; Tegnér, Jesper; Teichmann, Sarah; Valen, Eivind; Wahlestedt, Claes; Waki, Kazunori; Waterhouse, Andrew; Wells, Christine A; Winther, Ole; Wu, Linda; Yamaguchi, Kazumi; Yanagawa, Hiroshi; Yasuda, Jun; Zavolan, Mihaela; Hume, David A; Riken Omics Science Center; Arakawa, Takahiro; Fukuda, Shiro; Imamura, Kengo; Kai, Chikatoshi; Kaiho, Ai; Kawashima, Tsugumi; Kawazu, Chika; Kitazume, Yayoi; Kojima, Miki; Miura, Hisashi; Murakami, Kayoko; Murata, Mitsuyoshi; Ninomiya, Noriko; Nishiyori, Hiromi; Noma, Shohei; Ogawa, Chihiro; Sano, Takuma; Simon, Christophe; Tagami, Michihira; Takahashi, Yukari; Kawai, Jun; Hayashizaki, Yoshihide (2009). The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nature genetics, 41(5), 553-62.

Taddei, Angela; Van Houwe, Griet; Nagai, Shigeki; Erb, Ionas; van Nimwegen, Erik; Gasser, Susan M (2009). The functional importance of telomere clustering : Global changes in gene expression result from SIR factor dispersion. Genome research, 19(4), 611-25.

Rudolph, Markus G.; Wittmann, Julia G.; Klostermeier, Dagmar (2009). Crystallisation and preliminary characterization of the Thermus thermophilus Hera RNA helicase C-terminal Domain. Acta crystallographica. Section F, Structural biology and crystallization communications online, 65, 248-252.

Klostermeier, D.; Rudolph, M. G. (2009). A novel dimerization motif in the C-terminal domain of the Thermus thermophilus DEAD box helicase Hera confers substantial flexibility. Nucleic Acids Research, 37(2), 421-430.

Schindler, C.; Rodriguez, F.; Poon, P. P.; Singer, R. A.; Johnston, G. C.; Spang, A. (2009). The GAP Domain and the SNARE, Coatomer and Cargo Interaction Region of the ArfGAP2/3 Glo3 are Sufficient for Glo3 Function. Traffic, 10(9), 1362-1375.

Spang, A. (2009). On vesicle formation and tethering in the ER-Golgi shuttle. Current Opinion in Cell Biology, 21(4), 531-536.

Blanco, Jorge; Seimiya, Makiko; Pauli, Tobias; Reichert, Heinrich; Gehring, Walter J (2009). Wingless and Hedgehog signaling pathways regulate orthodenticle and eyes absent during ocelli development in Drosophila. Developmental biology, 329(1), 104-15.

Mueller, M.; Grauschopf, U.; Maier, T.; Glockshuber, R.; Ban, N. (2009). The structure of a cytolytic alpha-helical toxin pore reveals its assembly mechanism. Nature, 459(7247), 726-U135.

Seelig, J. (2009). Thermodynamics of Melittin Binding to Lipid Bilayers : aggregation/Pore Formation. Biochemistry, 48(12), 2586-2596.

Stettler, Hansruedi; Beuret, Nicole; Prescianotto-Baschong, Cristina; Fayard, Bérengère; Taupenot, Laurent; Spiess, Martin (2009). Determinants for chromogranin A sorting into the regulated secretory pathway are also sufficient to generate granule-like structures in non-endocrine cells. The Biochemical Journal, 418(1), 81-91.

Minasov, George; Padavattan, Sivaraman; Shuvalova, Ludmilla; Brunzelle, Joseph S; Miller, Darcie J; Baslé, Arnaud; Massa, Claudia; Collart, Frank R; Schirmer, Tilman; Anderson, Wayne F (2009). Crystal Structures of YkuI and Its Complex with Second Messenger Cyclic Di-GMP Suggest Catalytic Mechanism of Phosphodiester Bond Cleavage by EAL Domains. Journal of biological chemistry, 284(19), 13174-84.

Seelig, A.: Toward understanding P-glycoprotein structure-activity relationships, in: H. van de Waterbeemd; B. Testa; R. Mannhold; H. Kubinyi; G. Folkers (Ed.). (2009). Drug bioavailability, Weinheim: Wiley-VCH , S. S. 497-519.

Jenal, U.; Galperin, M. Y. (2009). Single domain response regulators : molecular switches with emerging roles in cell organization and dynamics. Current Opinion in Microbiology, 12(2), 152-60.

Duerig, Anna; Abel, Sören; Folcher, Marc; Nicollier, Micael; Schwede, Torsten; Amiot, Nicolas; Giese, Bernd; Jenal, Urs (2009). Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression. Genes & development, 23(1), 93-104.

Jenal, U.; Dorman, C. J. (2009). Small molecule signaling. Current Opinion in Microbiology, Vol. 12, H. 2, S. 125-128.



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