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Podinovskaia, Maria; Prescianotto-Baschong, Cristina; Buser, Dominik P.; Spang, Anne: A novel live cell imaging assay reveals regulation of endosome maturation, 06-212021.

Perkins, Arden; Tudorica, Dan A; Teixeira, Raphael D; Schirmer, Tilman; Zumwalt, Lindsay; Ogba, O Maduka; Cassidy, C Keith; Stansfeld, Phillip J; Guillemin, Karen (2021). A Bacterial Inflammation Sensor Regulates c-di-GMP Signaling, Adhesion, and Biofilm Formation.. mBio, 12(3), e0017321.

Lee, Minkyoung; Betz, Charles; Yin, Jianmin; Paatero, Ilkka; Schellinx, Niels; Carte, Adam N; Wilson, Christopher W; Ye, Weilan; Affolter, Markus; Belting, Heinz-Georg (2021). Control of dynamic cell behaviors during angiogenesis and anastomosis by Rasip 1.. Development, , Epub.

Isaikina, Polina; Tsai, Ching-Ju; Dietz, Nikolaus; Pamula, Filip; Grahl, Anne; Goldie, Kenneth N; Guixà-González, Ramon; Branco, Camila; Paolini-Bertrand, Marianne; Calo, Nicolas; Cerini, Fabrice; Schertler, Gebhard F X; Hartley, Oliver; Stahlberg, Henning; Maier, Timm; Deupi, Xavier; Grzesiek, Stephan (2021). Structural basis of the activation of the CC chemokine receptor 5 by a chemokine agonist.. Science advances, 7(25), eabg8685.

Matos, Anna L.L; Keller, Fabian; Wegner, Tristan; Del Castillo, Carla Elizabeth Cadena; Grill, David; Kudruk, Sergej; Spang, Anne; Glorius, Frank; Heuer, Andreas; Gerke, Volker (2021). CHIMs are versatile cholesterol analogs mimicking and visualizing cholesterol behavior in lipid bilayers and cells.. Communications Biology, 4(1), 720.

Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C; FANTOM consortium; Chatelain, Clément; Carninci, Piero; de Hoon, Michiel J L; Wasserman, Wyeth W; Bréhélin, Laurent; Lecellier, Charles-Henri (2021). Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.. Nature communications, 12(1), 3297.

Mari, Alfredo; Roloff, Tim; Stange, Madlen; Søgaard, Kirstine K; Asllanaj, Erblin; Tauriello, Gerardo; Alexander, Leila Tamara; Schweitzer, Michael; Leuzinger, Karoline; Gensch, Alexander; Martinez, Aurélien E; Bielicki, Julia; Pargger, Hans; Siegemund, Martin; Nickel, Christian H; Bingisser, Roland; Osthoff, Michael; Bassetti, Stefano; Sendi, Parham; Battegay, Manuel; Marzolini, Catia; Seth-Smith, Helena M B; Schwede, Torsten; Hirsch, Hans H; Egli, Adrian (2021). Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance.. Microorganisms, 9(5), 1094.

Fuentes, Diego Antonio Fernandez; Manfredi, Pablo; Jenal, Urs; Zampieri, Mattia (2021). Pareto optimality between growth-rate and lag-time couples metabolic noise to phenotypic heterogeneity in Escherichia coli. Nature Communications, 12(1), 3204.

Shetty, Sunil; Hall, Michael N. (2021). More writing: mTORC1 promotes m; 6; A mRNA methylation. Molecular Cell, 81(10), 2057-2058.

Iakovlev, Mikhail; Faravelli, Simone; Becskei, Attila (2021). Gene Families With Stochastic Exclusive Gene Choice Underlie Cell Adhesion in Mammalian Cells. Frontiers in Cell and Developmental Biology, 9, 642212.

Bloom, Jesse D; Chan, Yujia Alina; Baric, Ralph S; Bjorkman, Pamela J; Cobey, Sarah; Deverman, Benjamin E; Fisman, David N; Gupta, Ravindra; Iwasaki, Akiko; Lipsitch, Marc; Medzhitov, Ruslan; Neher, Richard A; Nielsen, Rasmus; Patterson, Nick; Stearns, Tim; van Nimwegen, Erik; Worobey, Michael; Relman, David A (2021). Investigate the origins of COVID-19.. Science (New York, N.Y.), 372(6543), 694.

Spang, Anne (2021). Means of intracellular communication: touching, kissing, fusing. Microbial Cell, 8(5), 87-90.

Breda, Jérémie; Zavolan, Mihaela; van Nimwegen, Erik (2021). Bayesian inference of gene expression states from single-cell RNA-seq data.. Nature biotechnology, , Epub ahead of print.

Li-Blatter, Xiaochun; Zweifel, Ludovit; Sharpe, Timothy (2021). A Familiar Protein-Ligand Interaction Revisited with Multiple Methods.. Methods in molecular biology (Clifton, N.J.), 2263, 47-79.

Chiyoda, Hirohisa; Kume, Masahiko; Del Castillo, Carla Cadena; Kontani, Kenji; Spang, Anne; Katada, Toshiaki; Fukuyama, Masamitsu (2021). Caenorhabditis elegans PTR/PTCHD PTR-18 promotes the clearance of extracellular hedgehog-related protein via endocytosis.. PLoS genetics, 17(4), e1009457.

Kaur, Hundeep; Jakob, Roman P; Marzinek, Jan K; Green, Robert; Imai, Yu; Bolla, Jani Reddy; Agustoni, Elia; Robinson, Carol V; Bond, Peter J; Lewis, Kim; Maier, Timm; Hiller, Sebastian (2021). The antibiotic darobactin mimics a β-strand to inhibit outer membrane insertase.. Nature, , AOP.

Böhm, Raphael; Imseng, Stefan; Jakob, Roman P.; Hall, Michael N.; Maier, Timm; Hiller, Sebastian (2021). The dynamic mechanism of 4E-BP1 recognition and phosphorylation by mTORC1. Molecular Cell, 81(11), 2403-2416.e5.

Ghosh, Souvik; Börsch, Anastasiya; Ghosh, Shreemoyee; Zavolan, Mihaela (2021). The transcriptional landscape of a hepatoma cell line grown on scaffolds of extracellular matrix proteins.. BMC genomics, 22(1), 238.

Yin, Jianmin; Heutschi, Daniel; Belting, Heinz-Georg; Affolter, Markus (2021). Building the complex architectures of vascular networks: Where to branch, where to connect and where to remodel?. Current topics in developmental biology, 143, 281-297.

Affolter, Markus (2021). Preface.. Current Topics in Developmental Biology, 143, xi-xiv.

Cohen, Jennifer D.; Cadena del Castillo, Carla E.; Kaech, Andres; Spang, Anne; Sundaram, Meera: The C. elegans PTCHD homolog PTR-4 is required for proper organization of the pre-cuticular apical extracellular matrix, 03-302021 (Link).

Pipercevic, Joka; Jakob, Roman P; Righetto, Ricardo D; Goldie, Kenneth N; Stahlberg, Henning; Maier, Timm; Hiller, Sebastian (2021). Identification of a Dps contamination in Mitomycin-C-induced expression of Colicin Ia.. Biochimica et biophysica acta. Biomembranes, 1863(7), 183607.

Dietz, Nikolaus; Huber, Markus; Sorg, Isabel; Goepfert, Arnaud; Harms, Alexander; Schirmer, Tilman; Dehio, Christoph (2021). Structural basis for selective AMPylation of Rac-subfamily GTPases by Bartonella effector protein 1 (Bep1). Proceedings of the National Academy of Sciences, 118(12), e2023245118.

Scott, Duncan E; Francis-Newton, Nicola J; Marsh, May E; Coyne, Anthony G; Fischer, Gerhard; Moschetti, Tommaso; Bayly, Andrew R; Sharpe, Timothy D; Haas, Kalina T; Barber, Lorraine; Valenzano, Chiara R; Srinivasan, Rajavel; Huggins, David J; Lee, Miyoung; Emery, Amy; Hardwick, Bryn; Ehebauer, Matthias; Dagostin, Claudio; Esposito, Alessandro; Pellegrini, Luca; Perrior, Trevor; McKenzie, Grahame; Blundell, Tom L; Hyvönen, Marko; Skidmore, John; Venkitaraman, Ashok R; Abell, Chris (2021). A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death.. Cell chemical biology, 28(6), 835-847.e5.

Vigano, M Alessandra; Ell, Clara-Maria; Kustermann, Manuela M M; Aguilar, Gustavo; Matsuda, Shinya; Zhao, Ning; Stasevich, Timothy J; Affolter, Markus; Pyrowolakis, George (2021). Protein manipulation using single copies of short peptide tags in cultured cells and in; Drosophila melanogaster; .. Development, , Epub.

Laborenz, Janina; Bykov, Yury S.; Knöringer, Katharina; Räschle, Markus; Filker, Sabine; Prescianotto-Baschong, Cristina; Spang, Anne; Tatsuta, Takashi; Langer, Thomas; Storchová, Zuzana; Schuldiner, Maya; Herrmann, Johannes M. (2021). The ER protein Ema19 facilitates the degradation of non-imported mitochondrial precursor proteins. Molecular Biology of the Cell, 32(8), 664-674.

Börsch, Anastasiya; Ham, Daniel J; Mittal, Nitish; Tintignac, Lionel A; Migliavacca, Eugenia; Feige, Jérôme N; Rüegg, Markus A; Zavolan, Mihaela (2021). Molecular and phenotypic analysis of rodent models reveals conserved and species-specific modulators of human sarcopenia.. Communications biology, 4(1), 194.

Skinner, Dominic J.; Song, Boya; Jeckel, Hannah; Jelli, Eric; Drescher, Knut; Dunkel, Jörn (2021). Topological Metric Detects Hidden Order in Disordered Media. Physical Review Letters, 126(4), 048101.

Santi, Isabella; Manfredi, Pablo; Maffei, Enea; Egli, Adrian; Jenal, Urs (2021). Evolution of Antibiotic Tolerance Shapes Resistance Development in Chronic Pseudomonas aeruginosa Infections. mBio, 12(1), e03482-20.

Studer, Gabriel; Tauriello, Gerardo; Bienert, Stefan; Biasini, Marco; Johner, Niklaus; Schwede, Torsten (2021). ProMod3-A versatile homology modelling toolbox.. PLoS computational biology, 17(1), e1008667.

Abiko, Layara Akemi; Rogowski, Marco; Gautier, Antoine; Schertler, Gebhard; Grzesiek, Stephan (2021). Efficient production of a functional G protein-coupled receptor in E. coli for structural studies. Journal of Biomolecular NMR, 75(1), 25-38.

Cléry, Antoine; Krepl, Miroslav; Nguyen, Cristina K X; Moursy, Ahmed; Jorjani, Hadi; Katsantoni, Maria; Okoniewski, Michal; Mittal, Nitish; Zavolan, Mihaela; Sponer, Jiri; Allain, Frédéric H-T (2021). Structure of SRSF1 RRM1 bound to RNA reveals an unexpected bimodal mode of interaction and explains its involvement in SMN1 exon7 splicing.. Nature communications, 12(1), 428.

Gomez, Andrea M; Traunmüller, Lisa; Scheiffele, Peter (2021). Neurexins: molecular codes for shaping neuronal synapses.. Nature reviews. Neuroscience, , Online ahead of print..

Sakoparnig, Thomas; Field, Chris; van Nimwegen, Erik (2021). Whole genome phylogenies reflect the distributions of recombination rates for many bacterial species.. eLife, 10, e65366.

Ruder, Ludwig; Schina, Riccardo; Kanodia, Harsh; Valencia-Garcia, Sara; Pivetta, Chiara; Arber, Silvia (2021). A functional map for diverse forelimb actions within brainstem circuitry.. Nature, , 1-28.

Jia, Jian-Jun; Lahr, Roni M; Solgaard, Michael T; Moraes, Bruno J; Pointet, Roberta; Yang, An-Dao; Celucci, Giovanna; Graber, Tyson E; Hoang, Huy-Dung; Niklaus, Marius R; Pena, Izabella A; Hollensen, Anne K; Smith, Ewan M; Chaker-Margot, Malik; Anton, Leonie; Dajadian, Christopher; Livingstone, Mark; Hearnden, Jaclyn; Wang, Xu-Dong; Yu, Yonghao; Maier, Timm; Damgaard, Christian K; Berman, Andrea J; Alain, Tommy; Fonseca, Bruno D (2021). mTORC1 promotes TOP mRNA translation through site-specific phosphorylation of LARP1.. Nucleic acids research, , Online ahead of print..

Kotini, Maria P.; Bachmann, Felix; Spickermann, Jochen; McSheehy, Paul M.; Affolter, Markus (2021). Probing the Effects of the FGFR-Inhibitor Derazantinib on Vascular Development in Zebrafish Embryos. Pharmaceuticals, 14(1), 25.

Gray, Declan A; White, Joshua B R; Oluwole, Abraham O; Rath, Parthasarathi; Glenwright, Amy J; Mazur, Adam; Zahn, Michael; Baslé, Arnaud; Morland, Carl; Evans, Sasha L; Cartmell, Alan; Robinson, Carol V; Hiller, Sebastian; Ranson, Neil A; Bolam, David N; van den Berg, Bert (2021). Insights into SusCD-mediated glycan import by a prominent gut symbiont.. Nature communications, 12(1), 44.

Hartmann, Raimo; Jeckel, Hannah; Jelli, Eric; Singh, Praveen K.; Vaidya, Sanika; Bayer, Miriam; Rode, Daniel K. H.; Vidakovic, Lucia; Díaz-Pascual, Francisco; Fong, Jiunn C. N.; Dragoš, Anna; Lamprecht, Olga; Thöming, Janne G.; Netter, Niklas; Häussler, Susanne; Nadell, Carey D.; Sourjik, Victor; Kovács, Ákos T.; Yildiz, Fitnat H.; Drescher, Knut (2021). Quantitative image analysis of microbial communities with BiofilmQ. Nature Microbiology, 6(2), 151-156.

Seuring, Carolin; Verasdonck, Joeri; Ringler, Philippe; Cadalbert, Riccardo; Stahlberg, Henning; Böckmann, Anja; Meier, Beat H.; Riek, Roland (2021). Correction to "Amyloid Fibril Polymorphism: Almost Identical on the Atomic Level, Mesoscopically Very Different". The Journal of Physical Chemistry B, 125(1), 484.

Maestre-Reyna, Manuel; Huang, Wei-Cheng; Wu, Wen-Jin; Singh, Praveen K.; Hartmann, Raimo; Wang, Po-Hsun; Lee, Cheng-Chung; Hikima, Takaaki; Yamamoto, Masaki; Bessho, Yoshitaka; Drescher, Knut; Tsai, Ming-Daw; Wang, Andrew H.-J. (2021). Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate-dependent autoproteolysis activity. IUBMB Life, 73(2), 418-431.

Righetto, Ricardo; Stahlberg, Henning (2021). Single Particle Analysis for High-Resolution 2D Electron Crystallography.. Methods in molecular biology (Clifton, N.J.), 2215, 267-284.

Tomašič, Tihomir; Rabbani, Said; Jakob, Roman P.; Reisner, Andreas; Jakopin, Žiga; Maier, Timm; Ernst, Beat; Anderluh, Marko (2021). Does targeting Arg98 of FimH lead to high affinity antagonists?. European Journal of Medicinal Chemistry, 211, 113093.

Donato, Flavio; Alberini, Cristina M.; Amso, Dima; Dragoi, George; Dranovsky, Alex; Newcombe, Nora S. (2021). The Ontogeny of Hippocampus-Dependent Memories. Journal of Neuroscience, 41(5), 920-926.

Fenyves, Bank G.; Arnold, Andreas; Gharat, Vaibhav G.; Haab, Carmen; Tishinov, Kiril; Peter, Fabian; de Quervain, Dominique; Papassotiropoulos, Andreas; Stetak, Attila (2021). Dual Role of an mps-2/KCNE-Dependent Pathway in Long-Term Memory and Age-Dependent Memory Decline. Current Biology, 31(3), 527-539.e7.

Blum, Thorsten B.; Housset, Dominique; Clabbers, Max T. B.; van Genderen, Eric; Bacia-Verloop, Maria; Zander, Ulrich; McCarthy, Andrew A.; Schoehn, Guy; Ling, Wai Li; Abrahams, Jan Pieter (2021). Statistically correcting dynamical electron scattering improves the refinement of protein nanocrystals, including charge refinement of coordinated metals. Acta Crystallographica Section D, 77(1), 75-85.

Coto-Llerena, Mairene; Tosti, Nadia; Taha-Mehlitz, Stephanie; Kancherla, Venkatesh; Paradiso, Viola; Gallon, John; Bianco, Gaia; Garofoli, Andrea; Ghosh, Souvik; Tang, Fengyuan; Ercan, Caner; Christofori, Gerhard M.; Matter, Matthias S.; Droeser, Raoul A.; Zavolan, Mihaela; Soysal, Savas D.; von Flüe, Markus; Kollmar, Otto; Terracciano, Luigi M.; Ng, Charlotte K. Y.; Piscuoglio, Salvatore (2021). Transcriptional Enhancer Factor Domain Family member 4 Exerts an Oncogenic Role in Hepatocellular Carcinoma by Hippo-Independent Regulation of Heat Shock Protein 70 Family Members. Hepatology Communications, 5(4), 661-674.

Sharma, Deepika; Lim, Roderick Y H; Pfohl, Thomas; Ekinci, Yasin (2021). Optimization of Nanofluidic Devices for Geometry-Induced Electrostatic Trapping. Particle & particle systems characterization, , 2000275.

Shafer, Maxwell E. R.; Sawh, Ahilya N.; Schier, Alexander F.: Gene family evolution underlies cell type diversification in the hypothalamus of teleosts, 01-112021 (Link).

Maffei, Enea; Shaidullina, Aisylu; Burkolter, Marco; Druelle, Valentin; Willi, Luc; Estermann, Fabienne; Michaelis, Sarah; Hilbi, Hubert; Thaler, David S.; Harms, Alexander: Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection, 03-082021.

Hoogenboom, Bart W; Hough, Loren E; Lemke, Edward A; Lim, Roderick YH; Onck, Patrick R; Zilman, Anton (2021). Physics of the nuclear pore complex: Theory, modeling and experiment. Physics reports, , ahead of print.

Teixeira, Raphael D.; Holzschuh, Fabian; Schirmer, Tilman (2021). Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase. Nature Communications, 12(1), 2162.

Kalita, Joanna; Kapinos, Larisa E; Lim, Roderick YH (2021). On the asymmetric partitioning of nucleocytoplasmic transport - recent insights and open questions. Journal of cell science, 134, jcs240382.

Bärland, Natalie; Perez, Camilo (2021). Selection of Transporter-Targeted Inhibitory Nanobodies by Solid-Supported-Membrane (SSM)-Based Electrophysiology. J. Vis. Exp., 171, e62578.

Sharma, Deepika; Lim, Roderick Y H; Pfohl, Thomas; Ekinci, Yasin (2021). Surface-modified elastomeric nanofluidic devices for single nanoparticle trapping. Microsystems & Nanoengineering, 7, 46.

Diaz-Pascual, Francisco; Lempp, Martin; Nosho, Kazuki; Jeckel, Hannah; Jo, Jeanyoung K.; Neuhaus, Konstantin; Hartmann, Raimo; Jelli, Eric; Hansen, Mads Frederik; Price-Whelan, Alexa; Dietrich, Lars E. P.; Link, Hannes; Drescher, Knut: Spatial alanine metabolism determines local growth dynamics of Escherichia coli colonies, 06-212021.

Singh, Praveen K.; Rode, Daniel K. H.; Buffard, Pauline; Nosho, Kazuki; Bayer, Miriam; Jeckel, Hannah; Jelli, Eric; Neuhaus, Konstantin; Jiménez-Siebert, Eva; Peschek, Nikolai; Glatter, Timo; Papenfort, Kai; Drescher, Knut: Vibrio cholerae biofilm dispersal regulator causes cell release from matrix through type IV pilus retraction, 05-212021.



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