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Diaz-Pascual, F., Lempp, M., Nosho, K., Jeckel, H., Jo, J. K., Neuhaus, K., Hartmann, R., Jelli, E., Hansen, M. F., Price-Whelan, A., Dietrich, L. E. P., Link, H. and Drescher, K. (2021) ‘Spatial alanine metabolism determines local growth dynamics of Escherichia coli colonies’, bioRxiv. Cold Spring Harbor Laboratory. doi: 10.1101/2021.02.28.433255.   edoc | Open Access
Singh, P. K., Rode, D. K. H., Buffard, P., Nosho, K., Bayer, M., Jeckel, H., Jelli, E., Neuhaus, K., Jiménez-Siebert, E., Peschek, N., Glatter, T., Papenfort, K. and Drescher, K. (2021) ‘Vibrio cholerae biofilm dispersal regulator causes cell release from matrix through type IV pilus retraction’, bioRxiv. Cold Spring Harbor Laboratory. doi: 10.1101/2021.05.02.442311.   edoc | Open Access
Jeckel, H. and Drescher, K. (2021) ‘Advances and opportunities in image analysis of bacterial cells and communities’, FEMS Microbiology Reviews, 45(4), p. fuaa062. doi: 10.1093/femsre/fuaa062.   edoc | Open Access
Hartmann, R., Jeckel, H., Jelli, E., Singh, P. K., Vaidya, S., Bayer, M., Rode, D. K. H., Vidakovic, L., Díaz-Pascual, F., Fong, J. C. N., Dragoš, A., Lamprecht, O., Thöming, J. G., Netter, N., Häussler, S., Nadell, C. D., Sourjik, V., Kovács, Ákos T., Yildiz, F. H. and Drescher, K. (2021) ‘Quantitative image analysis of microbial communities with BiofilmQ’, Nature Microbiology, 6(2), pp. 151–156. doi: 10.1038/s41564-020-00817-4.   edoc | Open Access
Skinner, D. J., Song, B., Jeckel, H., Jelli, E., Drescher, K. and Dunkel, J. (2021) ‘Topological Metric Detects Hidden Order in Disordered Media’, Physical Review Letters, 126(4), p. 48101. doi: 10.1103/PhysRevLett.126.048101.   edoc | Open Access
Maestre-Reyna, M., Huang, W.-C., Wu, W.-J., Singh, P. K., Hartmann, R., Wang, P.-H., Lee, C.-C., Hikima, T., Yamamoto, M., Bessho, Y., Drescher, K., Tsai, M.-D. and Wang, A. H.-J. (2021) ‘Vibrio cholerae biofilm scaffolding protein RbmA shows an intrinsic, phosphate-dependent autoproteolysis activity’, IUBMB Life, 73(2), pp. 418–431. doi: 10.1002/iub.2439.   edoc | Open Access
Henriques, G. J. B., van Vliet, S. and Doebeli, M. (2021) ‘Multilevel selection favors fragmentation modes that maintain cooperative interactions in multispecies communities’, PLoS computational biology, 17(9), p. e1008896. doi: 10.1371/journal.pcbi.1008896.   
van Vliet, S. and Doebeli, M. (2020) ‘Reply to Daybog and Kolodny: Necessary requirements for holobiont-level selection are robust to model assumptions’, Proceedings of the National Academy of Sciences of the United States of America, 117(22), p. 11864. doi: 10.1073/pnas.2005559117.   edoc | Open Access
Peschek, N., Herzog, R., Singh, P. K., Sprenger, M., Meyer, F., Fröhlich, K. S., Schröger, L., Bramkamp, M., Drescher, K. and Papenfort, K. (2020) ‘RNA-mediated control of cell shape modulates antibiotic resistance in Vibrio cholerae’, Nature Communications, 11, p. 6067. doi: 10.1038/s41467-020-19890-8.   edoc | Open Access
Rode, D. K. H., Singh, P. K. and Drescher, K. (2020) ‘Multicellular and unicellular responses of microbial biofilms to stress’, Biological Chemistry, 401(12), pp. 1365–1374. doi: 10.1515/hsz-2020-0213.   edoc | Open Access
Hartmann, R., van Teeseling, M. C. F., Thanbichler, M. and Drescher, K. (2020) ‘BacStalk: A comprehensive and interactive image analysis software tool for bacterial cell biology’, Molecular Microbiology, 114(1), pp. 140–150. doi: 10.1111/mmi.14501.   edoc | Open Access
Otto, S. B., Martin, M., Schäfer, D., Hartmann, R., Drescher, K., Brix, S., Dragoš, A. and Kovács, Ákos T. (2020) ‘Privatization of Biofilm Matrix in Structurally Heterogeneous Biofilms’, mSystems, 5(4), pp. e00425–20. doi: 10.1128/mSystems.00425-20.   edoc
Schwechheimer, C., Hebert, K., Tripathi, S., Singh, P. K., Floyd, K. A., Brown, E. R., Porcella, M. E., Osorio, J., Kiblen, J. T. M., Pagliai, F. A., Drescher, K., Rubin, S. M. and Yildiz, F. H. (2020) ‘A tyrosine phosphoregulatory system controls exopolysaccharide biosynthesis and biofilm formation in Vibrio cholerae’, PLoS Pathogens, 16(8), p. e1008745. doi: 10.1371/journal.ppat.1008745.   edoc | Open Access
Gallego-Hernandez, A. L., DePas, W. H., Park, J. H., Teschler, J. K., Hartmann, R., Jeckel, H., Drescher, K., Beyhan, S., Newman, D. K. and Yildiz, F. H. (2020) ‘Upregulation of virulence genes promotes Vibrio cholerae biofilm hyperinfectivity’, Proceedings of the National Academy of Sciences of the United States of America, 117(20), pp. 11010–11017. doi: 10.1073/pnas.1916571117.   edoc | Open Access
Brückner, S., Schubert, R., Kraushaar, T., Hartmann, R., Hoffmann, D., Jelli, E., Drescher, K., Müller, D. J., Oliver Essen, L. and Mösch, H.-U. (2020) ‘Kin discrimination in social yeast is mediated by cell surface receptors of the Flo11 adhesin family’, eLife, 9, p. e55587. doi: 10.7554/eLife.55587.   edoc | Open Access
Simmons, E. L., Bond, M. C., Koskella, B., Drescher, K., Bucci, V. and Nadell, C. D. (2020) ‘Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria’, mSystems, 5(3), pp. e00877–19. doi: 10.1128/mSystems.00877-19.   edoc | Open Access
Dal Co, A., van Vliet, S., Kiviet, D. J., Schlegel, S. and Ackermann, M. (2020) ‘Short-range interactions govern the dynamics and functions of microbial communities’, Nature ecology & evolution, 4(3), pp. 366–375. doi: 10.1038/s41559-019-1080-2.   
van Vliet, S. and Doebeli, M. (2019) ‘The role of multilevel selection in host microbiome evolution’, Proceedings of the National Academy of Sciences of the United States of America, 116(41), pp. 20591–20597. doi: 10.1073/pnas.1909790116.   edoc | Open Access
Dal Co, A., Ackermann, M. and van Vliet, S. (2019) ‘Metabolic activity affects the response of single cells to a nutrient switch in structured populations’, Journal of the Royal Society, Interface, 16(156), p. 20190182. doi: 10.1098/rsif.2019.0182.   edoc | Open Access
Díaz-Pascual, F., Hartmann, R., Lempp, M., Vidakovic, L., Song, B., Jeckel, H., Thormann, K. M., Yildiz, F. H., Dunkel, J., Link, H., Nadell, C. D. and Drescher, K. (2019) ‘Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function’, Nature Microbiology, 4(12), pp. 2136–2145. doi: 10.1038/s41564-019-0579-2.   edoc | Open Access
Pearce, P., Song, B., Skinner, D. J., Mok, R., Hartmann, R., Singh, P. K., Jeckel, H., Oishi, J. S., Drescher, K. and Dunkel, J. (2019) ‘Flow-Induced Symmetry Breaking in Growing Bacterial Biofilms’, Physical Review Letters, 123(25), p. 258101. doi: 10.1103/PhysRevLett.123.258101.   edoc | Open Access
Colin, R., Drescher, K. and Sourjik, V. (2019) ‘Chemotactic behaviour of Escherichia coli at high cell density’, Nature Communications, 10(1), p. 5329. doi: 10.1038/s41467-019-13179-1.   edoc | Open Access
Nisbett, L.-M., Binnenkade, L., Bacon, B., Hossain, S., Kotloski, N. J., Brutinel, E. D., Hartmann, R., Drescher, K., Arora, D. P., Muralidharan, S., Thormann, K. M., Gralnick, J. A. and Boon, E. M. (2019) ‘NosP Signaling Modulates the NO/H-NOX-Mediated Multicomponent c-Di-GMP Network and Biofilm Formation in Shewanella oneidensis’, Biochemistry, 58(48), pp. 4827–4841. doi: 10.1021/acs.biochem.9b00706.   edoc | Open Access
Jeckel, H., Matthey, N. and Drescher, K. (2019) ‘Common concepts for bacterial collectives’, eLife, 8, p. e47019. doi: 10.7554/eLife.47019.   edoc | Open Access
Drescher, K. (2019) ‘Bakterielle Multizellularität in Biofilmen’, BIOspektrum, 25(3), pp. 258–260. doi: 10.1007/s12268-019-1038-6.   edoc | Open Access
Jeckel, H., Jelli, E., Hartmann, R., Singh, P. K., Mok, R., Totz, J. F., Vidakovic, L., Eckhardt, B., Dunkel, J. and Drescher, K. (2019) ‘Learning the space-time phase diagram of bacterial swarm expansion’, Proceedings of the National Academy of Sciences of the United States of America, 116(5), pp. 1489–1494. doi: 10.1073/pnas.1811722116.   edoc | Open Access
Hartmann, R., Singh, P. K., Pearce, P., Mok, R., Song, B., Díaz-Pascual, F., Dunkel, J. and Drescher, K. (2019) ‘Emergence of three-dimensional order and structure in growing biofilms’, Nature Physics, 15(3), pp. 251–256. doi: 10.1038/s41567-018-0356-9.   edoc | Open Access
Dal Co, A., van Vliet, S. and Ackermann, M. (2019) ‘Emergent microscale gradients give rise to metabolic cross-feeding and antibiotic tolerance in clonal bacterial populations’, Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 374(1786), p. 20190080. doi: 10.1098/rstb.2019.0080.   
Patsch, D., van Vliet, S., Marcantini, L. G. and Johnson, D. R. (2018) ‘Generality of associations between biological richness and the rates of metabolic processes across microbial communities’, Environmental Microbiology, 20(12), pp. 4356–4368. doi: 10.1111/1462-2920.14352.   edoc
van Vliet, S., Dal Co, A., Winkler, A. R., Spriewald, S., Stecher, B. and Ackermann, M. (2018) ‘Spatially Correlated Gene Expression in Bacterial Groups: The Role of Lineage History, Spatial Gradients, and Cell-Cell Interactions’, Cell Systems, 6(4), pp. 496–507.e6. doi: 10.1016/j.cels.2018.03.009.   edoc | Open Access
Beuter, D., Gomes-Filho, J. V., Randau, L., Díaz-Pascual, F., Drescher, K. and Link, H. (2018) ‘Selective Enrichment of Slow-Growing Bacteria in a Metabolism-Wide CRISPRi Library with a TIMER Protein’, ACS Synthetic Biology, 7(12), pp. 2775–2782. doi: 10.1021/acssynbio.8b00379.   edoc
Dragoš, A., Kiesewalter, H., Martin, M., Hsu, C.-Y., Hartmann, R., Wechsler, T., Eriksen, C., Brix, S., Drescher, K., Stanley-Wall, N., Kümmerli, R. and Kovács, Ákos T. (2018) ‘Division of Labor during Biofilm Matrix Production’, Current Biology, 28(12), pp. 1903–1913.e5. doi: 10.1016/j.cub.2018.04.046.   edoc | Open Access
Martínez-García, R., Nadell, C. D., Hartmann, R., Drescher, K. and Bonachela, J. A. (2018) ‘Cell adhesion and fluid flow jointly initiate genotype spatial distribution in biofilms’, PLoS Computational Biology, 14(4), p. e1006094. doi: 10.1371/journal.pcbi.1006094.   edoc | Open Access
Vidakovic, L., Singh, P. K., Hartmann, R., Nadell, C. D. and Drescher, K. (2018) ‘Dynamic biofilm architecture confers individual and collective mechanisms of viral protection’, Nature Microbiology, 3(1), pp. 26–31. doi: 10.1038/s41564-017-0050-1.   edoc | Open Access
Simmons, M., Drescher, K., Nadell, C. D. and Bucci, V. (2018) ‘Phage mobility is a core determinant of phage-bacteria coexistence in biofilms’, ISME Journal, 12(2), pp. 531–543. doi: 10.1038/ismej.2017.190.   edoc | Open Access
van Vliet, S. and Ackermann, M. (2017) ‘Stochastic gene expression: bacterial elites in chemotaxis’, Molecular systems biology, 13(1), p. 909. doi: 10.15252/msb.20167458.   edoc | Open Access
Bayramoglu, B., Toubiana, D., van Vliet, S., Inglis, R. F., Shnerb, N. and Gillor, O. (2017) ‘Bet-hedging in bacteriocin producing Escherichia coli populations: the single cell perspective’, Scientific Reports, 7, p. 42068. doi: 10.1038/srep42068.   edoc | Open Access
Singh, P. K., Bartalomej, S., Hartmann, R., Jeckel, H., Vidakovic, L., Nadell, C. D. and Drescher, K. (2017) ‘Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal’, Current Biology, 27(21), pp. 3359–3366.e7. doi: 10.1016/j.cub.2017.09.041.   edoc | Open Access
Fong, J. C. N., Rogers, A., Michael, A. K., Parsley, N. C., Cornell, W.-C., Lin, Y.-C., Singh, P. K., Hartmann, R., Drescher, K., Vinogradov, E., Dietrich, L. E. P., Partch, C. L. and Yildiz, F. H. (2017) ‘Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms’, eLife, 6, p. e26163. doi: 10.7554/eLife.26163.   edoc | Open Access
Nadell, C. D., Ricaurte, D., Yan, J., Drescher, K. and Bassler, B. L. (2017) ‘Flow environment and matrix structure interact to determine spatial competition in Pseudomonas aeruginosa biofilms’, eLife, 6, p. e21855. doi: 10.7554/eLife.21855.   edoc | Open Access
Nadell, C. D., Drescher, K. and Foster, K. R. (2016) ‘Spatial structure, cooperation and competition in biofilms’, Nature Reviews Microbiology, 14(9), pp. 589–600. doi: 10.1038/nrmicro.2016.84.   edoc
Nadell, C. D., Hartmann, R. and Drescher, K. (2016) ‘An Emerging Grip on the Growth of Grounded Bacteria’, ACS Nano, 10(10), pp. 9109–9110. doi: 10.1021/acsnano.6b06461.   edoc
Besharova, O., Suchanek, V. M., Hartmann, R., Drescher, K. and Sourjik, V. (2016) ‘Diversification of Gene Expression during Formation of Static Submerged Biofilms by Escherichia coli’, Frontiers in Microbiology, 7, p. 1568. doi: 10.3389/fmicb.2016.01568.   edoc | Open Access
Drescher, K., Dunkel, J., Nadell, C. D., van Teeffelen, S., Grnja, I., Wingreen, N. S., Stone, H. A. and Bassler, B. L. (2016) ‘Architectural transitions in Vibrio cholerae biofilms at single-cell resolution’, Proceedings of the National Academy of Sciences of the United States of America, 113(14), pp. E2066-E2072. doi: 10.1073/pnas.1601702113.   edoc | Open Access
van Vliet, S. and Ackermann, M. (2015) ‘Bacterial Ventures into Multicellularity: Collectivism through Individuality’, PLoS biology, 13(6), p. e1002162. doi: 10.1371/journal.pbio.1002162.   edoc | Open Access
van Vliet, S. (2015) ‘Bacterial Dormancy: How to Decide When to Wake Up’, Current Biology, 25(17), pp. R753-R755. doi: 10.1016/j.cub.2015.07.039.   edoc
Persat, A., Nadell, C. D., Kim, M. K., Ingremeau, F., Siryaporn, A., Drescher, K., Wingreen, N. S., Bassler, B. L., Gitai, Z. and Stone, H. A. (2015) ‘The mechanical world of bacteria’, Cell, 161(5), pp. 988–997. doi: 10.1016/j.cell.2015.05.005.   edoc | Open Access
Nadell, C. D., Drescher, K., Wingreen, N. S. and Bassler, B. L. (2015) ‘Extracellular matrix structure governs invasion resistance in bacterial biofilms’, ISME Journal, 9(8), pp. 1700–1709. doi: 10.1038/ismej.2014.246.   edoc | Open Access
van Vliet, S., Hol, F. J. H., Weenink, T., Galajda, P. and Keymer, J. E. (2014) ‘The effects of chemical interactions and culture history on the colonization of structured habitats by competing bacterial populations’, BMC Microbiology, 14, p. 116. doi: 10.1186/1471-2180-14-116.   edoc | Open Access
Drescher, K., Nadell, C. D., Stone, H. A., Wingreen, N. S. and Bassler, B. L. (2014) ‘Solutions to the public goods dilemma in bacterial biofilms’, Current Biology, 24(1), pp. 50–55. doi: 10.1016/j.cub.2013.10.030.   edoc | Open Access
Kim, M. K., Drescher, K., Pak, O. S., Bassler, B. L. and Stone, H. A. (2014) ‘Filaments in curved streamlines: Rapid formation of; Staphylococcus aureus; biofilm streamers’, New Journal of Physics, 16(6), p. 65024. doi: 10.1088/1367-2630/16/6/065024.   edoc | Open Access
O’Loughlin, C. T., Miller, L. C., Siryaporn, A., Drescher, K., Semmelhack, M. F. and Bassler, B. L. (2013) ‘A quorum-sensing inhibitor blocks Pseudomonas aeruginosa virulence and biofilm formation’, Proceedings of the National Academy of Sciences of the United States of America, 110(44), pp. 17981–17986. doi: 10.1073/pnas.1316981110.   edoc | Open Access
Drescher, K., Shen, Y., Bassler, B. L. and Stone, H. A. (2013) ‘Biofilm streamers cause catastrophic disruption of flow with consequences for environmental and medical systems’, Proceedings of the National Academy of Sciences of the United States of America, 110(11), pp. 4345–4350. doi: 10.1073/pnas.1300321110.   edoc | Open Access
Dunkel, J., Heidenreich, S., Drescher, K., Wensink, H. H., Bär, M. and Goldstein, R. E. (2013) ‘Fluid dynamics of bacterial turbulence’, Physical Review Letters, 110(22), p. 228102. doi: 10.1103/PhysRevLett.110.228102.   edoc | Open Access
Nadell, C. D., Bucci, V., Drescher, K., Levin, S. A., Bassler, B. L. and Xavier, J. B. (2013) ‘Cutting through the complexity of cell collectives’, Proceedings of the Royal Society B: Biological Sciences, 280(1755), p. 20122770. doi: 10.1098/rspb.2012.2770.   edoc | Open Access
Sareh, S., Rossiter, J., Conn, A., Drescher, K. and Goldstein, R. E. (2013) ‘Swimming like algae: biomimetic soft artificial cilia’, Journal of the Royal Society, Interface, 10(78), p. 20120666. doi: 10.1098/rsif.2012.0666.   edoc | Open Access
Wensink, H. H., Dunkel, J., Heidenreich, S., Drescher, K., Goldstein, R. E., Löwen, H. and Yeomans, J. M. (2012) ‘Meso-scale turbulence in living fluids’, Proceedings of the National Academy of Sciences of the United States of America, 109(36), pp. 14308–14313. doi: 10.1073/pnas.1202032109.   edoc | Open Access
Solari, C. A., Drescher, K. and Goldstein, R. E. (2011) ‘The flagellar photoresponse in Volvox species’, Journal of Phycology, 47(3), pp. 580–583. doi: 10.1111/j.1529-8817.2011.00983.x.   edoc
Drescher, K., Dunkel, J., Cisneros, L. H., Ganguly, S. and Goldstein, R. E. (2011) ‘Fluid dynamics and noise in bacterial cell-cell and cell-surface scattering’, Proceedings of the National Academy of Sciences of the United States of America, 108(27), pp. 10940–10945. doi: 10.1073/pnas.1019079108.   edoc | Open Access
Solari, C. A., Drescher, K., Ganguly, S., Kessler, J. O., Michod, R. E. and Goldstein, R. E. (2011) ‘Flagellar phenotypic plasticity in volvocalean algae correlates with Péclet number’, Journal of the Royal Society, Interface, 8(63), pp. 1409–1417. doi: 10.1098/rsif.2011.0023.   edoc | Open Access
Drescher, K., Goldstein, R. E., Michel, N., Polin, M. and Tuval, I. (2010) ‘Direct measurement of the flow field around swimming microorganisms’, Physical Review Letters, 105(16), p. 168101. doi: 10.1103/PhysRevLett.105.168101.   edoc | Open Access
Drescher, K., Goldstein, R. E. and Tuval, I. (2010) ‘Fidelity of adaptive phototaxis’, Proceedings of the National Academy of Sciences of the United States of America, 107(25), pp. 11171–11176. doi: 10.1073/pnas.1000901107.   edoc | Open Access
Bulte, D. P., Drescher, K. and Jezzard, P. (2009) ‘Comparison of hypercapnia-based calibration techniques for measurement of cerebral oxygen metabolism with MRI’, Magnetic Resonance in Medicine, 61(2), pp. 391–398. doi: 10.1002/mrm.21862.   edoc
Polin, M., Tuval, I., Drescher, K., Gollub, J. P. and Goldstein, R. E. (2009) ‘Chlamydomonas swims with two “gears” in a eukaryotic version of run-and-tumble locomotion’, Science, 325(5939), pp. 487–490. doi: 10.1126/science.1172667.   edoc
Drescher, K., Leptos, K. C. and Goldstein, R. E. (2009) ‘How to track protists in three dimensions’, Review of Scientific Instruments, 80(1), p. 14301. doi: 10.1063/1.3053242.   edoc | Open Access
Drescher, K., Leptos, K. C., Tuval, I., Ishikawa, T., Pedley, T. J. and Goldstein, R. E. (2009) ‘Dancing volvox: hydrodynamic bound states of swimming algae’, Physical Review Letters, 102(16), p. 168101. doi: 10.1103/PhysRevLett.102.168101.   edoc | Open Access