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Suter, P., Dazert, E., Kuipers, J., Ng, C. K. Y., Boldanova, T., Hall , M. N., Heim, M. H. und Beerenwinkel, N. (2021) „Multi-omics subtyping of hepatocellular carcinoma patients using a Bayesian network mixture model“. bioRxiv. 10.1101/2021.12.16.473083.   edoc | Open Access
Adamer, M. R., Brüningk, S. C., Tejada-Arranz, A., Estermann, F., Basler, M. und Borgwardt, K. (2021) „reComBat: Batch effect removal in large-scale, multi-source omics data integration“. biorxiv.org. 10.1101/2021.11.22.469488.   edoc | Open Access
Sellner, B., Prakapaitė, R., van Berkum, M., Heinemann, M., Harms, A. und Jenal, U. (2021) „A new sugar for an old phage: A c-di-GMP dependent polysaccharide pathway sensitizes E. coli for bacteriophage infection“, bioRxiv. Cold Spring Harbor Laboratory. 10.1101/2021.09.27.461960.   edoc | Open Access
Bärland, N., Rueff, A.-S., Cebrero, G., Hutter, C. A. J., Seeger, M. A., Veening, J.-W. und Perez, C. (2021) „Mechanistic basis of choline import involved in teichoic acids and lipopolysaccharide modification“, bioRxiv. Cold Spring Harbor Laboratory. 10.1101/2021.09.14.460277.   edoc | Open Access
Solinger, J., Rashid, H.-O. und Spang, A. (2021) „FERARI and cargo adaptors coordinate cargo flow through sorting endosomes“. Durham, NC: Research Square. 10.21203/rs.3.rs-701696/v1.   edoc | Open Access
Podinovskaia, M., Prescianotto-Baschong, C., Buser, D. P. und Spang, A. (2021) „A novel live cell imaging assay reveals regulation of endosome maturation“, bioRxiv. Cold Spring Harbor Laboratory. 10.1101/2021.06.28.450147.   edoc | Open Access
Diaz-Pascual, F., Lempp, M., Nosho, K., Jeckel, H., Jo, J. K., Neuhaus, K., Hartmann, R., Jelli, E., Hansen, M. F., Price-Whelan, A., Dietrich, L. E. P., Link, H. und Drescher, K. (2021) „Spatial alanine metabolism determines local growth dynamics of Escherichia coli colonies“, bioRxiv. Cold Spring Harbor Laboratory. 10.1101/2021.02.28.433255.   edoc | Open Access
Sobota, M., Rodilla Ramirez, P. N., Cambré, A., Haas, T., Cornillet, D., Rocker, A., Aertsen, A. und Diard, M. (2021) „The expression of virulence increases outer-membrane permeability and sensitivity to envelope stress in Salmonella Typhimurium“. biorxiv.org. 10.1101/2021.06.08.447568.   edoc | Open Access
Ham, D. J., Börsch, A., Chojnowska, K., Lin, S., Leuchtmann, A. B., Ham, A. S., Thürkauf, M., Delezie, J., Furrer, R., Burri, D., Sinnreich, M., Handschin, C., Tintignac, L. A., Zavolan, M., Mittal, N. und Rüegg, M. A. (2021) „Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle“. bioRxiv. 10.1101/2021.05.28.446097.   edoc | Open Access
Singh, P. K., Rode, D. K. H., Buffard, P., Nosho, K., Bayer, M., Jeckel, H., Jelli, E., Neuhaus, K., Jiménez-Siebert, E., Peschek, N., Glatter, T., Papenfort, K. und Drescher, K. (2021) „Vibrio cholerae biofilm dispersal regulator causes cell release from matrix through type IV pilus retraction“, bioRxiv. Cold Spring Harbor Laboratory. 10.1101/2021.05.02.442311.   edoc | Open Access
Tocchini, C., Rohner, M., Von Stetina, S. E. und Mango, S. E. (2021) „Translation-dependent mRNA localization to Caenorhabditis elegans adherens junctions“. bioRxiv. 10.1101/2021.05.20.444977.   edoc
Christodoulou, G., Vogels, T. P. und Agnes, E. J. (2021) „Regimes and mechanisms of transient amplification in abstract and biological networks“. bioRxiv. 10.1101/2021.04.01.437964.   edoc
Agnes, E. J. und Vogels, T. P. (2021) „Interacting synapses stabilise both learning and neuronal dynamics in biological networks“. bioRxiv. 10.1101/2021.04.01.437962.   edoc
Cohen, J. D., Cadena del Castillo, C. E., Kaech, A., Spang, A. und Sundaram, M. (2021) „The C. elegans PTCHD homolog PTR-4 is required for proper organization of the pre-cuticular apical extracellular matrix“. bioRxiv. 10.1101/2021.03.30.437696.   edoc
Maffei, E., Shaidullina, A., Burkolter, M., Druelle, V., Willi, L., Estermann, F., Michaelis, S., Hilbi, H., Thaler, D. S. und Harms, A. (2021) „Systematic exploration of Escherichia coli phage-host interactions with the BASEL phage collection“. bioRxiv. 10.1101/2021.03.08.434280.   edoc | Open Access
Ng, C. K. Y., Dazert, E., Boldanova, T., Coto-Llerena, M., Nuciforo, S., Ercan, C., Suslov, A., Meier, M.-A., Bock, T. ., Schmidt, A., Ketterer, S., Wang, X., Wieland , S., Matter, M. S., Colombi, M., Piscuoglio, S., Terracciano, L., Hall, M. N. und Heim, M. H. (2021) „Proteogenomic characterization of hepatocellular carcinoma “, bioRxiv. Cold Spring Harbor Laboratory. 10.1101/2021.03.05.434147.   edoc | Open Access
Bakkeren, E., Gül, E., Huisman, J. S., Steiger, Y., Rocker, A., Hardt, W.-D. und Diard, M. (2021) „Cooperative virulence can emerge via horizontal gene transfer but is stabilized by transmission“. biorxiv.org. 10.1101/2021.02.11.430745.   edoc | Open Access
Shafer, M. E. R., Sawh, A. N. und Schier, A. F. (2021) „Gene family evolution underlies cell type diversification in the hypothalamus of teleosts“. bioRxiv. 10.1101/2020.12.13.414557.   edoc
Börsch, A. und Zavolan, M. (2021) „Transcription factor motif activity as a biomarker of muscle aging“, American journal of aging science and research, 2(1), S. 19–23.   edoc | Open Access
Moreno-Gámez, S., Dal Co, A., van Vliet, S. und Ackermann, M. (2021) „Microfluidics for Single-Cell Study of Antibiotic Tolerance and Persistence Induced by Nutrient Limitation“, in Verstraeten, N. und Michiels, J. (Hrsg.) Bacterial Persistence: Methods and Protocols. New York, NY: Springer US, S. 107–124. 10.1007/978-1-0716-1621-5_8.   edoc
Fromm, K. und Dehio, C. (2021) „The Impact of; Bartonella; VirB/VirD4 Type IV Secretion System Effectors on Eukaryotic Host Cells“, Frontiers in Microbiology, 12, S. 762582. 10.3389/fmicb.2021.762582.   edoc | Open Access
Marlaire, S. und Dehio, C. (2021) „Bartonella effector protein C mediates actin stress fiber formation via recruitment of GEF-H1 “, PLoS pathogens, 17(1), S. e1008548. 10.1371/journal.ppat.1008548.   edoc | Open Access
Wong, G. C. L., Antani, J. D. ., Lele, P. P., Chen, J. ., Nan, B. ., Kühn, M. J. ., Persat, A., Bru, J.-L. ., Molin Høyland-Kroghsbo, N., Siryaporn, A. ., Conrad, J. C. ., Carrara, F. ., Yawata, Y., Stocker, R., Brun, Y. V., Whitfield, G. B. ., Lee, C. K. ., de Anda, J. ., Schmidt, W. C., Golestanian, R. ., O’Toole, G. A. ., Floyd, K. A. ., Yildiz, F. H. ., Yang, S. ., Jin, F. ., Toyofuku, M., Eberl, L. ., Nomura, N. ., Zacharoff, L. A. ., El-Naggar, M. Y., Yalcin, S. E. ., Malvankar, N. S. ., Rojas-Andrade, M. D., Hochbaum, A. I. ., Yan, J. ., Stone, H. A. ., Wingreen, N. S. ., Bassler, B. L. ., Wu, Y. ., Xu, H. ., Drescher, K. . und Dunkel, J. (2021) „Roadmap on emerging concepts in the physical biology of bacterial biofilms: from surface sensing to community formation“, Physical biology, 18(5), S. 51501. 10.1088/1478-3975/abdc0e.   edoc | Open Access
Bond, M. C., Vidakovic, L., Singh, P. K., Drescher, K. und Nadell, C. D. (2021) „Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells“, eLife, 10, S. e65355. 10.7554/eLife.65355.   edoc | Open Access
Huemer, M., Mairpady Shambat, S., Bergada-Pijuan, J., Söderholm, S., Boumasmoud, M., Vulin, C., Gómez-Mejia, A., Antelo Varela, M., Tripathi, V., Götschi, S., Marques Maggio, E., Hasse, B., Brugger, S. D., Bumann, D., Schuepbach, R. A. und Zinkernagel, A. S. (2021) „Molecular reprogramming and phenotype switching in; Staphylococcus aureus; lead to high antibiotic persistence and affect therapy success“, Proceedings of the National Academy of Sciences of the United States of America, 118(7), S. e2014920118. 10.1073/pnas.2014920118.   edoc
Di­az-Pascual, F., Lempp, M., Nosho, K., Jeckel, H., Jo, J. K., Neuhaus, K., Hartmann, R., Jelli, E., Hansen, M. F., Price-Whelan, A., Dietrich, L. E. P., Link, H. und Drescher, K. (2021) „Spatial alanine metabolism determines local growth dynamics of textitEscherichia coli colonies“, eLife, 10, S. e70794. 10.7554/eLife.70794.   edoc | Open Access
Brodmann, M., Schnider, S. T. und Basler, M. (2021) „Type VI Secretion System and Its Effectors PdpC, PdpD, and OpiA Contribute to; Francisella; Virulence in Galleria mellonella Larvae“, Infection and immunity, 89(7), S. e0057920. 10.1128/IAI.00579-20.   edoc | Open Access
Wimmi, S., Balinovic, A., Jeckel, H., Selinger, L., Lampaki, D., Eisemann, E., Meuskens, I., Linke, D., Drescher, K., Endesfelder, U. und Diepold, A. (2021) „Author Correction: Dynamic relocalization of cytosolic type III secretion system components prevents premature protein secretion at low external pH“, Nature communications, 12(1), S. 2685. 10.1038/s41467-021-23080-5.   edoc | Open Access
Bakkeren, E., Herter, J. A., Huisman, J. S., Steiger, Y., Gül, E., Newson, J. P. M., Brachmann, A. O., Piel, J., Regoes, R., Bonhoeffer, S., Diard, M. und Hardt, W.-D. (2021) „Pathogen invasion-dependent tissue reservoirs and plasmid-encoded antibiotic degradation boost plasmid spread in the gut“, eLife, 10, S. e69744. 10.7554/eLife.69744.   edoc | Open Access
Dehinwal, R., Cooley, D., Rakov, A. V., Alugupalli, A. S., Harmon, J., Cunrath, O., Vallabhajosyula, P., Bumann, D. und Schifferli, D. M. (2021) „Increased Production of Outer Membrane Vesicles by Salmonella Interferes with Complement-Mediated Innate Immune Attack“, mBio, 12(3), S. e0086921. 10.1128/mBio.00869-21.   edoc | Open Access
Haschka, D., Tymoszuk, P., Petzer, V., Hilbe, R., Heeke, S., Dichtl, S., Skvortsov, S., Demetz, E., Berger, S., Seifert, M., Mitterstiller, A.-M., Moser, P., Bumann, D., Nairz, M., Theurl, I. und Weiss, G. (2021) „Ferritin H deficiency deteriorates cellular iron handling and worsens Salmonella typhimurium infection by triggering hyperinflammation“, JCI insight, 6(13), S. e141760. 10.1172/jci.insight.141760.   edoc | Open Access
Bhamidimarri, S. P., Young, T. R., Shanmugam, M., Soderholm, S., Baslé, A., Bumann, D. und van den Berg, B. (2021) „Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site“, PLoS Biology, 19(11), S. e3001446. 10.1371/journal.pbio.3001446.   edoc | Open Access
Li, J., Claudi, B., Fanous, J., Chicherova, N., Cianfanelli, F. R., Campbell, R. A. A. und Bumann, D. (2021) „Tissue compartmentalization enables; Salmonella; persistence during chemotherapy“, Proceedings of the National Academy of Sciences of the United States of America, 118(51), S. e2113951118. 10.1073/pnas.2113951118.   edoc | Open Access
Kaiser, M. S., Milan, G., Lin, S., Oliveri, F., Chojnowska, K., Tintignac, L. A., Mittal, N., Zimmerli, C. E., Glass, D. J., Zavolan, M., Ham, D. J. und Rüegg, M. A. (2021) „Dual roles of mTORC1-dependent activation of the ubiquitin-proteasome system in muscle proteostasis“, bioRxiv, S. 1–39. 10.1101/2021.11.16.468773.   edoc
Tishinov, K. und Spang, A. (2021) „The mRNA decapping complex is buffered by nuclear localization“, Journal of Cell Science, 134(18), S. 1–15. 10.1242/jcs.259156.   edoc
Podinovskaia, M., Prescianotto-Baschong, C., Buser, D. P. und Spang, A. (2021) „A novel live-cell imaging assay reveals regulation of endosome maturation“, eLife, 10, S. 1–32. 10.7554/eLife.70982.   edoc | Open Access
Cadena Del Castillo, C. E., Hannich, J. T., Kaech, A., Chiyoda, H., Brewer, J., Fukuyama, M., Færgeman, N. J., Riezman, H. und Spang, A. (2021) „Patched regulates lipid“, Nature Communications, 12(1), S. 4898. 10.1038/s41467-021-24995-9.   edoc | Open Access
Previtali, S. C., Cohn, R. D. und Ruegg, M. A. (2021) „Editorial: Current Insights Into LAMA2 Disease“, Frontiers in molecular neuroscience, 14, S. 780635. 10.3389/fnmol.2021.780635.   edoc | Open Access
Shyp, V., Dubey, B. N., Böhm, R., Hartl, J., Nesper, J., Vorholt, J. A., Hiller, S., Schirmer, T. und Jenal, U. (2021) „Reciprocal growth control by competitive binding of nucleotide second messengers to a metabolic switch in Caulobacter crescentus“, Nature Microbiology, 6(1), S. 59–72. 10.1038/s41564-020-00809-4.   edoc
Hiller, S. (2021) „Molecular chaperones and their denaturing effect on client proteins“, Journal of Biomolecular NMR, 75(1), S. 1–8. 10.1007/s10858-020-00353-7.   edoc | Open Access
Vallejo-Gracia, A., Sastre, D., Colomer-Molera, M., Solé, L., Navarro-Pérez, M., Capera, J., Roig, S. R., Pedrós-Gámez, O., Estadella, I., Szilágyi, O., Panyi, G., Hajdú, P. und Felipe, A. (2021) „KCNE4-dependent functional consequences of Kv1.3-related leukocyte physiology“, Scientific Reports, 11(1), S. 14632. 10.1038/s41598-021-94015-9.   edoc | Open Access
Roig, S. R., Solé, L., Cassinelli, S., Colomer-Molera, M., Sastre, D., Serrano-Novillo, C., Serrano-Albarrás, A., Lillo, M. P., Tamkun, M. M. und Felipe, A. (2021) „Calmodulin-dependent KCNE4 dimerization controls membrane targeting“, Scientific Reports, 11(1), S. 14046. 10.1038/s41598-021-93562-5.   edoc | Open Access
Tocchini, C., Rohner, M., Guerard, L., Ray, P., Von Stetina, S. E. und Mango, S. E. (2021) „Translation-dependent mRNA localization to Caenorhabditis elegans adherens junctions“, Development, 148(24), S. 200027. 10.1242/dev.200027.   edoc | Open Access
Haenel, Q., Guerard, L., MacColl, A. D. C. und Berner, D. (2021) „The maintenance of standing genetic variation: Gene flow vs. selective neutrality in Atlantic stickleback fish“, Molecular ecology, 31(3), S. 811–821. 10.1111/mec.16269.   edoc | Open Access
Aksamentov, I., Roemer, C., Hodcroft, E. B. und Neher, R. A. (2021) „Nextclade: clade assignment, mutation calling and quality control for viral genomes“, Journal of Open Source Software, 6(67), S. 3773. Verfügbar unter: https://joss.theoj.org/papers/10.21105/joss.03773.   edoc | Open Access
Ude, J., Tripathi, V., Buyck, J. M., Söderholm, S., Cunrath, O., Fanous, J., Claudi, B., Egli, A., Schleberger, C., Hiller, S. und Bumann, D. (2021) „Outer membrane permeability: Antimicrobials and diverse nutrients bypass porins in Pseudomonas aeruginosa“, Proceedings of the National Academy of Sciences of the United States of America, 118(31), S. e2107644118. 10.1073/pnas.2107644118.   edoc | Open Access
Ritzmann, N., Manioglu, S., Hiller, S. und Müller, D. J. (2021) „Monitoring the antibiotic darobactin modulating the β-barrel assembly factor BamA“, Structure, 30(March), S. 1–10. 10.1016/j.str.2021.11.004.   edoc | Open Access
Ried, M. K., Wild, R., Zhu, J., Pipercevic, J., Sturm, K., Broger, L., Harmel, R. K., Abriata, L. A., Hothorn, L. A., Fiedler, D., Hiller, S. und Hothorn, M. (2021) „Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasis“, Nature communications, 12(1), S. 384. 10.1038/s41467-020-20681-4.   edoc | Open Access
Hiller, S. und Broz, P. (2021) „Active membrane rupture spurs a range of cell deaths“, Nature, 591(7848), S. 36–37. 10.1038/d41586-021-00297-4.   edoc
He, W., Yu, G., Li, T., Bai, L., Yang, Y., Xue, Z., Pang, Y., Reichmann, D., Hiller, S., He, L., Liu, M. und Quan, S. (2021) „Chaperone Spy Protects Outer Membrane Proteins from Folding Stress via Dynamic Complex Formation“, mBio, 12(5), S. e0213021. 10.1128/mBio.02130-21.   edoc | Open Access
Maffei, E. und Harms, A. (2021) „Messages from the dead protect bacteria from viral attack“, The EMBO Journal, 41(3), S. e110382. 10.15252/embj.2021110382.   edoc
Linsenmeier, M., Hondele, M., Grigolato, F., Secchi, E., Weis, K. und Arosio, P. (2021) „Dynamic arrest and aging of biomolecular condensates are regulated by low-complexity domains, RNA and biochemical activity“, bioRxiv. 10.1101/2021.02.26.433003.   edoc | Open Access
Wollny, D., Vernot, B., Wang, J., Hondele, M., Hyman, A., Weis, K., Camp, J. G., Dora Tang, T. .-Y. und Treutlein, B. (2021) „Characterization of RNA content in individual phase-separated coacervate microdroplets“, bioRxiv. 10.1101/2021.03.08.434405.   edoc | Open Access
Mazille, M., Scheiffele, P. und Mauger, O. (2021) „Cue-specific remodeling of the neuronal transcriptome through intron retention programs“, BioRxiv, S. 2021.10.13.463312. 10.1101/2021.10.13.463312.   edoc | Open Access
Böhringer, N., Green, R., Liu, Y., Mettal, U., Marner, M., Modaresi, S. M., Jakob, R. P., Wuisan, Z. G., Maier, T., Iinishi, A., Hiller, S., Lewis, K. und Schäberle, T. F. (2021) „Mutasynthetic Production and Antimicrobial Characterization of Darobactin Analogs“, Microbiology spectrum, 9(3), S. e0153521. 10.1128/spectrum.01535-21.   edoc | Open Access
Macošek, J., Mas, G. und Hiller, S. (2021) „Redefining Molecular Chaperones as Chaotropes“, Frontiers in molecular biosciences, 8, S. 683132. 10.3389/fmolb.2021.683132.   edoc | Open Access
Vavassori, S., Chou, J., Faletti, L. E., Haunerdinger, V., Opitz, L., Joset, P., Fraser, C. J., Prader, S., Gao, X., Schuch, L. A., Wagner, M., Hoefele, J., Maccari, M. E., Zhu, Y., Elakis, G., Gabbett, M. T., Forstner, M., Omran, H., Kaiser, T., Kessler, C., Olbrich, H., Frosk, P., Almutairi, A., Platt, C. D., Elkins, M., Weeks, S., Rubin, T., Planas, R., Marchetti, T., Koovely, D., Klämbt, V., Soliman, N. A., von Hardenberg, S., Klemann, C., Baumann, U., Lenz, D., Klein-Franke, A., Schwemmle, M., Huber, M., Sturm, E., Hartleif, S., Häffner, K., Gimpel, C., Brotschi, B., Laube, G., Güngör, T., Buckley, M. F., Kottke, R., Staufner, C., Hildebrandt, F., Reu-Hofer, S., Moll, S., Weber, A., Kaur, H., Ehl, S., Hiller, S., Geha, R., Roscioli, T., Griese, M. und Pachlopnik Schmid, J. (2021) „Multisystem inflammation and susceptibility to viral infections in human ZNFX1 deficiency“, The Journal of Allergy & Clinical Immunology, 148(2), S. 381–393. 10.1016/j.jaci.2021.03.045.   edoc | Open Access
Millarte, V., Schlienger, S., Kälin, S. und Spiess, M. (2021) „Rabaptin5 targets autophagy to damaged endosomes and Salmonella vacuoles via FIP200 and ATG16L1“, EMBO Reports, S. e53429. 10.15252/embr.202153429.   edoc | Open Access
Zimmer, A., Wang, N., Ibach, M. K., Fehlmann, B., Schicktanz, N. S., Bentz, D., Michael, T., Papassotiropoulos, A. und de Quervain, D. J. F. (2021) „Effectiveness of a smartphone-based, augmented reality exposure app to reduce fear of spiders in real-life: A randomized controlled trial“, Journal of anxiety disorders, 82, S. 102442. 10.1016/j.janxdis.2021.102442.   edoc | Open Access
Bentz, D., Wang, N., Ibach, M. K., Schicktanz, N. S., Zimmer, A., Papassotiropoulos, A. und de Quervain, D. J. F. (2021) „Effectiveness of a stand-alone, smartphone-based virtual reality exposure app to reduce fear of heights in real-life: a randomized trial“, NPJ digital medicine, 4(1), S. 16. 10.1038/s41746-021-00387-7.   edoc | Open Access
Roth, C. B., Papassotiropoulos, A., Brühl, A. B., Lang, U. E. und Huber, C. G. (2021) „Psychiatry in the Digital Age: A Blessing or a Curse?“, International Journal of Environmental Research and Public Health, 18(16), S. 8302. 10.3390/ijerph18168302.   edoc | Open Access
Hotz, J., Fehlmann, B., Papassotiropoulos, A., de Quervain, D. J. und Schicktanz, N. S. (2021) „Cannabidiol enhances verbal episodic memory in healthy young participants: A randomized clinical trial“, Journal of Psychiatric Research, 143, S. 327–333. 10.1016/j.jpsychires.2021.09.007.   edoc | Open Access
Huddleston, J., Hadfield, J., Sibley, T. R., Lee, J., Fay, K., Ilcisin, M., Harkins, E., Bedford, T., Neher, R. A. und Hodcroft, E. B. (2021) „Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens“, Journal of Open Source Software, 6(57), S. 4. 10.21105/joss.02906.   edoc | Open Access
Dyrdak, R., Hodcroft, E. B., Wahlund, M., Neher, R. A. und Albert, J. (2021) „Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020“, Journal of clinical virology, 136(March), S. 104754. 10.1016/j.jcv.2021.104754.   edoc | Open Access
Carvalho, V., Prabudiansyah, I., Kovacik, L., Chami, M., Kieffer, R., van der Valk, R., de Lange, N., Engel, A. und Aubin-Tam, M.-E. (2021) „The cytoplasmic domain of the AAA+ protease FtsH is tilted with respect to the membrane to facilitate substrate entry“, Journal of Biological Chemistry, 296, S. 100029. 10.1074/jbc.RA120.014739.   edoc | Open Access
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