| Year | Award | Recipient(s) |
| 2023 | EMBO Membership | BASLER Marek |
| 2021 | Boehringer Ingelheim Fonds PhD fellowship | CHEUNG Hoi Ching |
| 2021 | Novartis FreeNovation Grant | KOLESNIKOV Maxim, PLUM Miro, BASLER Marek |
| 2020 | Biozentrum PhD Fellowship | HEYNISCH Alexander |
| 2019 | ERC Consolidator Grant | BASLER Marek |
| 2019 | Biozentrum PhD Fellowship | ENGELIN Melanie |
| 2019 | Boehringer Ingelheim Fonds PhD fellowship | KOLESNIKOV Maxim |
| 2019 | Sanofi - Institut Pasteur - International Junior Award | BASLER Marek |
| 2018 | EMBO Long-Term Fellowship | NARAYANAN Sharath |
| 2018 | EMBO Gold Medal | BASLER Marek |
| 2018 | Friedrich Miescher Award | BASLER Marek |
| 2017 | J.C.W. Shepherd PhD Student Prize of the Biozentrum | BRODMANN Maj |
| 2016 | J.C.W. Shepherd PhD Student Prize of the Biozentrum | VETTIGER Andrea |
| 2015 | Biozentrum PhD Fellowship for Excellence | DELBART Florian |
| 2015 | EMBO Young Investigator | BASLER Marek |
| 2014 | SNSF Starting Grant | BASLER Marek |
| 2014 | Biozentrum PhD Fellowship for Excellence | HAGMANN Anna |
| 2014 | Biozentrum PhD Fellowship for Excellence | BRODMANN Maj |
| 2014 | Biozentrum PhD Fellowship for Excellence | VETTIGER Andrea |
| 2013 | Biozentrum PhD Fellowship for Excellence | RINGEL Peter |
