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Burmann, B. M., Gerez, J. A., Matečko-Burmann, I., Campioni, S., Kumari, P., Ghosh, D., Mazur, A., Aspholm, E. E., Šulskis, D., Wawrzyniuk, M., Bock, T., Schmidt, A., Rüdiger, S. G. D., Riek, R. and Hiller, S. (2020) ‘Regulation of α-synuclein by chaperones in mammalian cells’, Nature, 577, pp. 127–132. 10.1038/s41586-019-1808-9.   edoc
Mazur, A., Broz, P. and Hiller, S. (2019) ‘An integrative protocol for the structure determination of the mouse ASC-PYD filament’, in Sohn, J. (ed.) Methods in Enzymology. New York: Elsevier, pp. 205–222. 10.1016/bs.mie.2019.04.033.   edoc
Morgado, L., Burmann, B. M., Sharpe, T., Mazur, A. and Hiller, S. (2017) ‘The dynamic dimer structure of the chaperone Trigger Factor’, Nature Communications, 8, p. 1992. 10.1038/s41467-017-02196-7.   edoc | Open Access
Benning, F. M. C., Sakiyama, Y., Mazur, A., Bukhari, H. S. T., Lim, R. Y. H. and Maier, T. (2017) ‘High-Speed Atomic Force Microscopy Visualization of the Dynamics of the Multienzyme Fatty Acid Synthase’, ACS Nano, 11(11), pp. 10852–10859. 10.1021/acsnano.7b04216.   edoc
Swiss Institute of Bioinformatics Members, S. (2016) ‘The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases’, Nucleic acids research, 44(D1), pp. D27-D37. 10.1093/nar/gkv1310.   edoc | Open Access
Ravotti, F., Sborgi, L., Cadalbert, R., Huber, M., Mazur, A., Broz, P., Hiller, S., Meier, B. H. and Böckmann, A. (2016) ‘Sequence-specific solid-state NMR assignments of the mouse ASC PYRIN domain in its filament form’, Biomolecular NMR Assignments, 10(1), pp. 107–115. 10.1007/s12104-015-9647-6.   edoc
Stanger, F. V., Burmann, B. M., Harms, A., Aragão, H., Mazur, A., Sharpe, T., Dehio, C., Hiller, S. and Schirmer, T. (2016) ‘Intrinsic regulation of FIC-domain AMP-transferases by oligomerization and automodification’, Proceedings of the National Academy of Sciences of the United States of America, 113(5), pp. E529-E537. 10.1073/pnas.1516930113.   edoc | Open Access
Leung, H. T. A., Bignucolo, O., Aregger, R., Dames, S. A., Mazur, A., Bernèche, S. and Grzesiek, S. (2016) ‘A Rigorous and Efficient Method To Reweight Very Large Conformational Ensembles Using Average Experimental Data and To Determine Their Relative Information Content’, Journal of chemical theory and computation, 12(1), pp. 383–394. 10.1021/acs.jctc.5b00759.   edoc
Sborgi, L., Ravotti, F., Dandey, V. P., Dick, M. S., Mazur, A., Reckel, S., Chami, M., Scherer, S., Huber, M., Böckmann, A., Egelman, E. H., Stahlberg, H., Broz, P., Meier, B. H. and Hiller, S. (2015) ‘Structure and assembly of the mouse ASC inflammasome by combined NMR spectroscopy and cryo-electron microscopy’, Proceedings of the National Academy of Sciences of the United States of America, 112(43), pp. 13237–13242. 10.1073/pnas.1507579112.   edoc | Open Access
Rämö, P., Drewek, A., Arrieumerlou, C., Beerenwinkel, N., Ben-Tekaya, H., Cardel, B., Casanova, A., Conde-Alvarez, R., Cossart, P., Csúcs, G., Eicher, S., Emmenlauer, M., Greber, U., Hardt, W.-D., Helenius, A., Kasper, C., Kaufmann, A., Kreibich, S., Kühbacher, A., Kunszt, P., Low, S. H., Mercer, J., Mudrak, D., Muntwiler, S., Pelkmans, L., Pizarro-Cerdá, J., Podvinec, M., Pujadas, E., Rinn, B., Rouilly, V., Schmich, F., Siebourg-Polster, J., Snijder, B., Stebler, M., Studer, G., Szczurek, E., Truttmann, M., von Mering, C., Vonderheit, A., Yakimovich, A., Bühlmann, P. and Dehio, C. (2014) ‘Simultaneous analysis of large-scale RNAi screens for pathogen entry’, BMC Genomics, 15(1), p. 1162. 10.1186/1471-2164-15-1162.   edoc | Open Access
Rouilly, V., Pujadas, E., Hullár, B., Balázs, C., Kunszt, P. and Podvinec, M. (2012) ‘iBRAIN2: automated analysis and data handling for RNAi screens’, Studies in health technology and informatics, Vol. 175, pp. 205–213.   edoc
Podvinec, M., Lim, S. P., Schmidt, T. B., Scarsi, M., Wen, D., Sonntag, L. S., Sanschagrin, P., Shenkin, P. S. and Schwede, T. (2010) ‘Novel Inhibitors of Dengue Virus Methyltransferase : discovery by in vitro-driven virtual screening on a Desktop Computer Grid’, Journal of Medicinal Chemistry, Vol. 53, H. 4, pp. 1483–1495. 10.1021/jm900776m.   edoc
Berman, H. M., Westbrook, J. D., Gabanyi, M. J., Tao, W., Shah, R., Kouranov, A., Schwede, T., Arnold, K., Kiefer, F., Bordoli, L., Kopp, J., Podvinec, M., Adams, P. D., Carter, L. G., Minor, W., Nair, R. and Baer, J. L. (2009) ‘The protein structure initiative structural genomics knowledgebase’, Nucleic Acids Research, 37(1 Supplement), pp. D365-D368. 10.1093/nar/gkn790.   edoc | Open Access
Podvinec, M., Schwede, T. and Peitsch, M. C. (2008) ‘Docking for neglected diseases as community efforts’, in Computational structural biology. Singapore: World Scientific Publishing, pp. 683–704.   edoc
Moehren, U., Denayer, S., Podvinec, M., Verrijdt, G. and Claessens, F. (2008) ‘Identification of androgen-selective androgen-response elements in the human aquaporin-5 and Rad9 genes’, The Biochemical Journal, Vol. 411, Pt. 3, pp. 679–686.   edoc
Zosso, D., Podvinec, M., Muller, M., Aebersold, R., Peitsch, M. C. and Schwede, T. (2007) ‘Tandem mass spectrometry protein identification on a PC grid’, Studies in health technology and informatics, Vol. 126, pp. 3–12.   edoc
Zosso, D., Arnold, K., Schwede, T. and Podvinec, M. (2007) ‘SWISS-TANDEM : a Web-based workspace for MS/MS protein identification on PC grid’, in Twentieth IEEE international symposium on computer-based medical systems. Los Alamitos, Calif.: IEEE Computer Society, pp. 406–411. 10.1109/CBMS.2007.103.   edoc
Scarsi, M., Podvinec, M., Roth, A., Hug, H., Kersten, S., Albrecht, H., Schwede, T., Meyer, U. A. and Rucker, C. (2007) ‘Sulfonylureas and glinides exhibit peroxisome proliferator-activated receptor gamma activity : a combined virtual screening and biological assay approach’, Molecular pharmacology, Vol. 71, H. 2, pp. 398–406. 10.1124/mol.106.024596.   edoc
Podvinec, M., Maffioletti, S., Kunszt, P., Arnold, K., Cerutti, L., Nyffeler, B., Schlapbach, R., Turker, C., Stockinger, H., Thomas, A. J., Peitsch, M. C. and Schwede, T. (2006) ‘The SwissBioGrid Project : objectives, preliminary results and lessons learned’, in e-Science 2006 : 2nd IEEE International Conference on e-Science and Grid Computing. Los Alamitos, Calif.: IEEE Computer Society. 10.1109/E-SCIENCE.2006.261081.   edoc
Podvinec, M. and Meyer, U. A. (2006) ‘Prediction of cis-regulatory elements for drug-activated transcription factors in the regulation of drug-metabolising enzymes and drug transporters’, Expert Opinion on Drug Metabolism & Toxicology, Vol. 2, H. 3, pp. 367–379.   edoc
Gnerre, C., Schuster, G. U., Roth, A., Handschin, C., Johansson, L., Looser, R., Parini, P., Podvinec, M., Robertsson, K., Gustafsson, J. .-A. and Meyer, U. A. (2005) ‘LXR deficiency and cholesterol feeding affect the expression and phenobarbital-mediated induction of cytochromes P450 in mouse liver’, Journal of Lipid Research, 46(8), pp. 1633–1642. 10.1194/jlr.M400453-JLR200.   edoc | Open Access
Dietrich, F. S., Voegeli, S., Brachat, S., Lerch, A., Gates, K., Steiner, S., Mohr, C., Pohlmann, R., Luedi, P., Choi, S., Wing, R. A., Flavier, A., Gaffney, T. D. and Philippsen, P. (2004) ‘The Ashbya gossypii genome as a tool for mapping the ancient Saccharomyces cerevisiae genome’, Science, Vol. 304, no. 5668, pp. 304–307. 10.1126/science.1095781.   edoc
Schreiber, S. N., Emter, R., Hock, M. B., Knutti, D., Cardenas, J., Podvinec, M., Oakeley, E. J. and Kralli, A. (2004) ‘The estrogen-related receptor α (ERRα) functions in PPARγ coactivator 1α (PGC-1α)-induced mitochondrial biogenesis’, Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, H. 17, pp. 6472–6477. 10.1073/pnas.0308686101.   edoc
Handschin, C., Blattler, S., Roth, A., Looser, R., Oscarson, M., Kaufmann, M. R., Podvinec, M., Gnerre, C. and Meyer, U. A. (2004) ‘The evolution of drug-activated nuclear receptors : one ancestral gene diverged into two xenosensor genes in mammals’, Nuclear Receptor, Vol. 2, H. 1, p. 7. 10.1186/1478-1336-2-7.   edoc | Open Access
Podvinec, M., Handschin, C., Looser, R. and Meyer, U. A. (2004) ‘Identification of the xenosensors regulating human 5-aminolevulinate synthase’, Proceedings of the National Academy of Sciences of the United States of America, 101(24), pp. 9127–9132. 10.1073/pnas.0401845101.   edoc
Handschin, C., Podvinec, M. and Meyer, U. A. (2003) ‘In silico approaches, and in vitro and in vivo experiments to predict induction of drug metabolism’, Drug news & perspectives, 16(7), pp. 423–434.   edoc
Sanyal, S., Handschin, C., Podvinec, M., Song, K. .-H., Kim, H. .-J., Kim, J. .-Y., Seo, Y. .-W., Kim, S. .-A., Kwon, H. .-B., Lee, K., Kim, W. .-S., Meyer, U. A. and Choi, H. .-S. (2003) ‘Molecular cloning and characterization of chicken orphan nuclear receptor cTR2’, General and Comparative Endocrinology, 132(3), pp. 474–484. 10.1016/S0016-6480(03)00116-3.   edoc | Open Access
Jung, D., Podvinec, M., Meyer, U. A., Mangelsdorf, D. J., Fried, M., Meier, P. J. and Kullak-Ublick, G. A. (2002) ‘Human organic anion transporting polypeptide 8 promoter is transactivated by the farnesoid X receptor/bile acid receptorw’, Gastroenterology, Vol. 122, H. 7, pp. 1954–1966.   edoc
Podvinec, M., Kaufmann, M. R., Handschin, C. and Meyer, U. A. (2002) ‘NUBIScan, an in silico approach for prediction of nuclear receptor response elements’, Molecular endocrinology, Vol. 16, H. 6, pp. 1269–1279.   edoc | Open Access
Handschin, C., Podvinec, M., Amherd, R., Looser, R., Ourlin, J. .-C. and Meyer, U. A. (2002) ‘Cholesterol and bile acids regulate xenosensor signaling in drug-mediated induction of cytochromes P450’, Journal of Biological Chemistry, 277(33), pp. 29561–29567. 10.1074/jbc.M202739200.   edoc | Open Access
Fraser, D. J., Podvinec, M., Kaufmann, M. R. and Meyer, U. A. (2002) ‘Drugs mediate the transcriptional activation of the 5-aminolevulinic acid synthase (ALAS1) gene via the chicken xenobiotic-sensing nuclear receptor (CXR)’, Journal of biological chemistry, Vol. 277 , no. 38, pp. 34717–34726.   edoc
Meyer, R. P., Podvinec, M. and Meyer, U. A. (2002) ‘Cytochrome P450 CYP1A1 accumulates in the cytosol of kidney and brain and is activated by heme’, Molecular pharmacology, Vol. 62, H. 5, pp. 1061–1067.   edoc
Handschin, C., Podvinec, M., Looser, R., Amherd, R. and Meyer, U. A. (2001) ‘Multiple enhancer units mediate drug induction of CYP2H1 by xenobiotic-sensing orphan nuclear receptor chicken xenobiotic receptor’, Molecular pharmacology, 60(4), pp. 681–689.   edoc
Handschin, C., Podvinec, M., Stockli, J., Hoffmann, K. and Meyer, U. A. (2001) ‘Conservation of signaling pathways of xenobiotic-sensing orphan nuclear receptors, chicken xenobiotic receptor, constitutive androstane receptor, and pregnane X receptor, from birds to humans’, Molecular endocrinology, Vol. 15, H. 9, pp. 1571–1585.   edoc | Open Access
Handschin, C., Podvinec, M. and Meyer, U. A. (2000) ‘CXR, a chicken xenobiotic-sensing orphan nuclear receptor, is related to both mammalian pregnane X receptor (PXR) and constitutive androstane receptor (CAR)’, Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 20, pp. 10769–10774.   edoc | Open Access
Brachat, A., Liebundguth, N., Rebischung, C., Lemire, S., Scharer, F., Hoepfner, D., Demchyshyn, V., Howald, I., Dusterhoft, A., Mostl, D., Pohlmann, R., Kotter, P., Hall, M. N., Wach, A. and Philippsen, P. (2000) ‘Analysis of deletion phenotypes and GFP fusions of 21 novel Saccharomyces cerevisiae open reading frames’, Yeast, 16(3), pp. 241–253. 10.1002/(SICI)1097-0061(200002)16:3<241::AID-YEA517>3.0.CO;2-T.   edoc
Wendland, J., Pohlmann, R., Dietrich, F., Steiner, S., Mohr, C. and Philippsen, P. (1999) ‘Compact organization of rRNA genes in the filamentous fungus Ashbya gossypii’, Current Genetics, Vol. 35, H. 6, pp. 618–625.   edoc
Philippsen, P., Kleine, K., Pohlmann, R., Dusterhoft, A., Hamberg, K., Hegemann, J. H., Obermaier, B., Urrestarazu, L. A., Aert, R., Albermann, K., Altmann, R., Andre, B., Baladron, V., Ballesta, J. P., Becam, A. M., Beinhauer, J., Boskovic, J., Buitrago, M. J., Bussereau, F., Coster, F., Crouzet, M., D’Angelo, M., Dal Pero, F., De Antoni, A. and Hani, J. (1997) ‘The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications’, Nature, Vol. 387, no. 6632, Suppl., pp. 93–98.   edoc
Pöhlmann, R. and Philippsen, P. (1996) ‘Sequencing a cosmid clone of Saccharomyces cerevisiae chromosome XIV reveals 12 new open reading frames (ORFs) and an ancient duplication of six ORFs’, Yeast, Vol. 12, H. 4, pp. 391–402.   edoc