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Righetto, R. D. and Engel, B. D. (2022) ‘Expanding the arsenal of bacterial spearguns’, Nature Microbiology, 7(3), pp. 363–364. 10.1038/s41564-022-01078-z.   edoc
van den Hoek, H., Klena, N., Jordan, M. A., Alvarez Viar, G., Righetto, R. D., Schaffer, M., Erdmann, P. S., Wan, W., Geimer, S., Plitzko, J. M., Baumeister, W., Pigino, G., Hamel, V., Guichard, P. and Engel, B. D. (2022) ‘In situ architecture of the ciliary base reveals the stepwise assembly of intraflagellar transport train’, Science, 377(6605), pp. 543–548. 10.1126/science.abm6704.   edoc
Dietrich, H. M., Righetto, R. D., Kumar, A., Wietrzynski, W., Trischler, R., Schuller, S. K., Wagner, J., Schwarz, F. M., Engel, B. D., Müller, V. and Schuller, J. M. (2022) ‘Membrane-anchored HDCR nanowires drive hydrogen-powered CO2 fixation’, Nature, 607(7920), pp. 823–830. 10.1038/s41586-022-04971-z.   edoc
Lamm, L., Righetto, R. D., Wietrzynski, W., Pöge, M., Martinez-Sanchez, A., Peng, T. and Engel, B. D. (2022) ‘MemBrain: a deep learning-aided pipeline for detection of membrane proteins in cryo-electron tomograms’, Computer Methods and Programs in Biomedicine, 224, p. 106990. 10.1016/j.cmpb.2022.106990.   edoc | Open Access
Moebel, E., Martinez-Sanchez, A., Lamm, L., Righetto, R. D., Wietrzynski, W., Albert, S., Larivière, D., Fourmentin, E., Pfeffer, S., Ortiz, J., Baumeister, W., Peng, T., Engel, B. D. and Kervrann, C. (2021) ‘Deep learning improves macromolecule identification in 3D cellular cryo-electron tomograms’, Nature Methods, 18(11), pp. 1386–1394. 10.1038/s41592-021-01275-4.   edoc
Waltz, F., Salinas-Giegé, T., Englmeier, R., Meichel, H., Soufari, H., Kuhn, L., Pfeffer, S., Förster, F., Engel, B. D., Giegé, P., Drouard, L. and Hashem, Y. (2021) ‘How to build a ribosome from RNA fragments in Chlamydomonas mitochondria’, Nature Communications, 12(1), p. 7176. 10.1038/s41467-021-27200-z.   edoc | Open Access
Zabret, J., Bohn, S., Schuller, S. K., Arnolds, O., Möller, M., Meier-Credo, J., Liauw, P., Chan, A., Tajkhorshid, E., Langer, J. D., Stoll, R., Krieger-Liszkay, A., Engel, B. D., Rudack, T., Schuller, J. M. and Nowaczyk, M. M. (2021) ‘Structural insights into photosystem II assembly’, Nature Plants. Scientific Reports, 7(4), pp. 524–538. 10.1038/s41477-021-00895-0.   edoc
Wietrzynski, W. and Engel, B. D. (2021) ‘Chlorophyll biogenesis sees the light’, Nature Plants. Scientific Reports, 7(4), pp. 380–381. 10.1038/s41477-021-00900-6.   edoc
Gupta, T. K., Klumpe, S., Gries, K., Heinz, S., Wietrzynski, W., Ohnishi, N., Niemeyer, J., Spaniol, B., Schaffer, M., Rast, A., Ostermeier, M., Strauss, M., Plitzko, J. M., Baumeister, W., Rudack, T., Sakamoto, W., Nickelsen, J., Schuller, J. M., Schroda, M. and Engel, B. D. (2021) ‘Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity’, Cell, 184(14), pp. 3643–3659.e23. 10.1016/j.cell.2021.05.011.   edoc | Open Access
Theis, J., Niemeyer, J., Schmollinger, S., Ries, F., Rütgers, M., Gupta, T. K., Sommer, F., Muranaka, L. S., Venn, B., Schulz-Raffelt, M., Willmund, F., Engel, B. D. and Schroda, M. (2020) ‘VIPP2 interacts with VIPP1 and HSP22E/F at chloroplast membranes and modulates a retrograde signal for HSP22E/F gene expression’, Plant, Cell and Environment, 43(5), pp. 1212–1229. 10.1111/pce.13732.   edoc | Open Access
Le Guennec, M., Klena, N., Gambarotto, D., Laporte, M. H., Tassin, A.-M., van den Hoek, H., Erdmann, P. S., Schaffer, M., Kovacik, L., Borgers, S., Goldie, K. N., Stahlberg, H., Bornens, M., Azimzadeh, J., Engel, B. D., Hamel, V. and Guichard, P. (2020) ‘A helical inner scaffold provides a structural basis for centriole cohesion’, Science advances, 6(7), p. eaaz4137. 10.1126/sciadv.aaz4137.   edoc | Open Access
Wietrzynski, W., Schaffer, M., Tegunov, D., Albert, S., Kanazawa, A., Plitzko, J. M., Baumeister, W. and Engel, B. D. (2020) ‘Charting the native architecture of Chlamydomonas thylakoid membranes with single-molecule precision’, eLife, 9, p. e53740. 10.7554/eLife.53740.   edoc | Open Access
Albert, S., Wietrzynski, W., Lee, C.-W., Schaffer, M., Beck, F., Schuller, J. M., Salomé, P. A., Plitzko, J. M., Baumeister, W. and Engel, B. D. (2020) ‘Direct visualization of degradation microcompartments at the ER membrane’, Proceedings of the National Academy of Sciences of the United States of America, 117(2), pp. 1069–1080. 10.1073/pnas.1905641117.   edoc | Open Access
He, S., Chou, H.-T., Matthies, D., Wunder, T., Meyer, M. T., Atkinson, N., Martinez-Sanchez, A., Jeffrey, P. D., Port, S. A., Patena, W., He, G., Chen, V. K., Hughson, F. M., McCormick, A. J., Mueller-Cajar, O., Engel, B. D., Yu, Z. and Jonikas, M. C. (2020) ‘The structural basis of Rubisco phase separation in the pyrenoid’, Nature Plants. Scientific Reports, 6(12), pp. 1480–1490. 10.1038/s41477-020-00811-y.   edoc
Theis, J., Gupta, T. K., Klingler, J., Wan, W., Albert, S., Keller, S., Engel, B. D. and Schroda, M. (2019) ‘VIPP1 rods engulf membranes containing phosphatidylinositol phosphates’, Scientific Reports, 9(1), p. 8725. 10.1038/s41598-019-44259-3.   edoc | Open Access
Schaffer, M., Pfeffer, S., Mahamid, J., Kleindiek, S., Laugks, T., Albert, S., Engel, B. D., Rummel, A., Smith, A. J., Baumeister, W. and Plitzko, J. M. (2019) ‘A cryo-FIB lift-out technique enables molecular-resolution cryo-ET within native Caenorhabditis elegans tissue’, Nature Methods, 16(8), pp. 757–762. 10.1038/s41592-019-0497-5.   edoc
Schuller, J. M., Birrell, J. A., Tanaka, H., Konuma, T., Wulfhorst, H., Cox, N., Schuller, S. K., Thiemann, J., Lubitz, W., Sétif, P., Ikegami, T., Engel, B. D., Kurisu, G. and Nowaczyk, M. M. (2019) ‘Structural adaptations of photosynthetic complex I enable ferredoxin-dependent electron transfer’, Science, 363(6424), pp. 257–260. 10.1126/science.aau3613.   edoc
Craig, E. W., Mueller, D. M., Bigge, B. M., Schaffer, M., Engel, B. D. and Avasthi, P. (2019) ‘The elusive actin cytoskeleton of a green alga expressing both conventional and divergent actins’, Molecular Biology of the Cell, 30(22), pp. 2827–2837. 10.1091/mbc.E19-03-0141.   edoc | Open Access
Chicano, A., Crosas, E., Otón, J., Melero, R., Engel, B. D. and Daban, J.-R. (2019) ‘Frozen-hydrated chromatin from metaphase chromosomes has an interdigitated multilayer structure’, The EMBO Journal, 38(7), p. e99769. 10.15252/embj.201899769.   edoc | Open Access
Rast, A., Schaffer, M., Albert, S., Wan, W., Pfeffer, S., Beck, F., Plitzko, J. M., Nickelsen, J. and Engel, B. D. (2019) ‘Biogenic regions of cyanobacterial thylakoids form contact sites with the plasma membrane’, Nature Plants. Scientific Reports, 5(4), pp. 436–446. 10.1038/s41477-019-0399-7.   edoc
Kovtun, O., Leneva, N., Bykov, Y. S., Ariotti, N., Teasdale, R. D., Schaffer, M., Engel, B. D., Owen, D. J., Briggs, J. A. G. and Collins, B. M. (2018) ‘Structure of the membrane-assembled retromer coat determined by cryo-electron tomography’, Nature, 561(7724), pp. 561–564. 10.1038/s41586-018-0526-z.   edoc
Mosalaganti, S., Kosinski, J., Albert, S., Schaffer, M., Strenkert, D., Salomé, P. A., Merchant, S. S., Plitzko, J. M., Baumeister, W., Engel, B. D. and Beck, M. (2018) ‘In situ architecture of the algal nuclear pore complex’, Nature Communications, 9(1), p. 2361. 10.1038/s41467-018-04739-y.   edoc | Open Access
Delarue, M., Brittingham, G. P., Pfeffer, S., Surovtsev, I. V., Pinglay, S., Kennedy, K. J., Schaffer, M., Gutierrez, J. I., Sang, D., Poterewicz, G., Chung, J. K., Plitzko, J. M., Groves, J. T., Jacobs-Wagner, C., Engel, B. D. and Holt, L. J. (2018) ‘mTORC1 controls phase separation and the biophysical properties of the cytoplasm by tuning crowding’, Cell, 174(2), pp. 338–349.e20. 10.1016/j.cell.2018.05.042.   edoc | Open Access
Albanese, P., Melero, R., Engel, B. D., Grinzato, A., Berto, P., Manfredi, M., Chiodoni, A., Vargas, J., Sorzano, C. Óscar S., Marengo, E., Saracco, G., Zanotti, G., Carazo, J.-M. and Pagliano, C. (2017) ‘Pea PSII-LHCII supercomplexes form pairs by making connections across the stromal gap’, Scientific Reports, 7(1), p. 10067. 10.1038/s41598-017-10700-8.   edoc | Open Access
Bykov, Y. S., Schaffer, M., Dodonova, S. O., Albert, S., Plitzko, J. M., Baumeister, W., Engel, B. D. and Briggs, J. A. (2017) ‘The structure of the COPI coat determined within the cell’, eLife, 6, p. e32493. 10.7554/eLife.32493.   edoc | Open Access
Albert, S., Schaffer, M., Beck, F., Mosalaganti, S., Asano, S., Thomas, H. F., Plitzko, J. M., Beck, M., Baumeister, W. and Engel, B. D. (2017) ‘Proteasomes tether to two distinct sites at the nuclear pore complex’, Proceedings of the National Academy of Sciences of the United States of America, 114(52), pp. 13726–13731. 10.1073/pnas.1716305114.   edoc | Open Access
Pfeffer, S., Dudek, J., Schaffer, M., Ng, B. G., Albert, S., Plitzko, J. M., Baumeister, W., Zimmermann, R., Freeze, H. H., Engel, B. D. and Förster, F. (2017) ‘Dissecting the molecular organization of the translocon-associated protein complex’, Nature Communications, 8, p. 14516. 10.1038/ncomms14516.   edoc | Open Access
Schaffer, M., Mahamid, J., Engel, B. D., Laugks, T., Baumeister, W. and Plitzko, J. M. (2017) ‘Optimized cryo-focused ion beam sample preparation aimed at in situ structural studies of membrane proteins’, Journal of structural biology, 197(2), pp. 73–82. 10.1016/j.jsb.2016.07.010.   edoc
Freeman Rosenzweig, E. S., Xu, B., Kuhn Cuellar, L., Martinez-Sanchez, A., Schaffer, M., Strauss, M., Cartwright, H. N., Ronceray, P., Plitzko, J. M., Förster, F., Wingreen, N. S., Engel, B. D., Mackinder, L. C. M. and Jonikas, M. C. (2017) ‘The eukaryotic CO2-concentrating organelle is liquid-like and exhibits dynamic reorganization’, Cell, 171(1), pp. 148–162.e19. 10.1016/j.cell.2017.08.008.   edoc | Open Access
Asano, S., Engel, B. D. and Baumeister, W. (2016) ‘In situ cryo-electron tomography: a post-reductionist approach to structural biology’, Journal of Molecular Biology, 428(2 Pt A), pp. 332–343. 10.1016/j.jmb.2015.09.030.   edoc
Engel, B. D., Schaffer, M., Kuhn Cuellar, L., Villa, E., Plitzko, J. M. and Baumeister, W. (2015) ‘Native architecture of the Chlamydomonas chloroplast revealed by in situ cryo-electron tomography’, eLife, 4, p. e04889. 10.7554/eLife.04889.   edoc | Open Access
Engel, B. D., Schaffer, M., Albert, S., Asano, S., Plitzko, J. M. and Baumeister, W. (2015) ‘In situ structural analysis of Golgi intracisternal protein arrays’, Proceedings of the National Academy of Sciences of the United States of America, 112(36), pp. 11264–11269. 10.1073/pnas.1515337112.   edoc | Open Access
Schaffer, M., Engel, B. D., Laugks, T., Mahamid, J., Plitzko, J. M. and Baumeister, W. (2015) ‘Cryo-focused ion beam sample preparation for imaging vitreous cells by cryo-electron tomography’, Bio-protocol, 5(17), p. e1575. 10.21769/bioprotoc.1575.   edoc | Open Access
Bhogaraju, S., Weber, K., Engel, B. D., Lechtreck, K.-F. and Lorentzen, E. (2014) ‘Getting tubulin to the tip of the cilium: one IFT train, many different tubulin cargo-binding sites?’, BioEssays : news and reviews in molecular, cellular and developmental biology, 36(5), pp. 463–467. 10.1002/bies.201400007.   edoc
Bhogaraju, S., Engel, B. D. and Lorentzen, E. (2013) ‘Intraflagellar transport complex structure and cargo interactions’, Cilia, 2(1), p. 10. 10.1186/2046-2530-2-10.   edoc | Open Access
Shih, S. M., Engel, B. D., Kocabas, F., Bilyard, T., Gennerich, A., Marshall, W. F. and Yildiz, A. (2013) ‘Intraflagellar transport drives flagellar surface motility’, eLife, 2, p. e00744. 10.7554/eLife.00744.   edoc | Open Access
Mizuno, N., Taschner, M., Engel, B. D. and Lorentzen, E. (2012) ‘Structural studies of ciliary components’, Journal of Molecular Biology, 422(2), pp. 163–180. 10.1016/j.jmb.2012.05.040.   edoc | Open Access
Rigort, A., Villa, E., Bäuerlein, F. J. B., Engel, B. D. and Plitzko, J. M. (2012) ‘Integrative approaches for cellular cryo-electron tomography: correlative imaging and focused ion beam micromachining’, Methods in cell biology, 111, pp. 259–281. 10.1016/B978-0-12-416026-2.00014-5.   edoc
Engel, B. D., Ishikawa, H., Wemmer, K. A., Geimer, S., Wakabayashi, K.- ichi, Hirono, M., Craige, B., Pazour, G. J., Witman, G. B., Kamiya, R. and Marshall, W. F. (2012) ‘The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function’, Journal of Cell Biology, 199(1), pp. 151–167. 10.1083/jcb.201206068.   edoc | Open Access
Engel, B. D., Ishikawa, H., Feldman, J. L., Wilson, C. W., Chuang, P.-T., Snedecor, J., Williams, J., Sun, Z. and Marshall, W. F. (2011) ‘A cell-based screen for inhibitors of flagella-driven motility in Chlamydomonas reveals a novel modulator of ciliary length and retrograde actin flow’, Cell Motility and the Cytoskeleton , 68(3), pp. 188–203. 10.1002/cm.20504.   edoc
Engel, B. D., Lechtreck, K.-F., Sakai, T., Ikebe, M., Witman, G. B. and Marshall, W. F. (2009) ‘Total internal reflection fluorescence (TIRF) microscopy of Chlamydomonas flagella’, Methods in cell biology, 93, pp. 157–177. 10.1016/S0091-679X(08)93009-0.   edoc | Open Access
Engel, B. D., Ludington, W. B. and Marshall, W. F. (2009) ‘Intraflagellar transport particle size scales inversely with flagellar length: revisiting the balance-point length control model’, Journal of Cell Biology, 187(1), pp. 81–89. 10.1083/jcb.200812084.   edoc