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Studer, G., Tauriello, G., Bienert, S., Biasini, M., Johner, N. and Schwede, T. (2021) ‘ProMod3-A versatile homology modelling toolbox’, PLoS Computational Biology, 17(1), p. e1008667. doi: 10.1371/journal.pcbi.1008667.   edoc
Mari, A., Roloff, T., Stange, M., Søgaard, K. K., Asllanaj, E., Tauriello, G., Alexander, L. T., Schweitzer, M., Leuzinger, K., Gensch, A., Martinez, A. E., Bielicki, J., Pargger, H., Siegemund, M., Nickel, C. H., Bingisser, R., Osthoff, M., Bassetti, S., Sendi, P., Battegay, M., Marzolini, C., Seth-Smith, H. M. B., Schwede, T., Hirsch, H. H. and Egli, A. (2021) ‘Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance’, Microorganisms, 9(5), p. 1094. doi: 10.3390/microorganisms9051094.   edoc
Kryshtafovych, A., Moult, J., Billings, W. M., Della Corte, D., Fidelis, K., Kwon, S., Olechnovič, K., Seok, C., Venclovas, Česlovas, Won, J. and Casp-Covid participants (2021) ‘Modeling SARS-CoV-2 proteins in the CASP-commons experiment’, Proteins, pp. 1–10. doi: 10.1002/prot.26231.   
Alexander, L. T., Lepore, R., Kryshtafovych, A., Adamopoulos, A., Alahuhta, M., Arvin, A. M., Bomble, Y. J., Böttcher, B., Breyton, C., Chiarini, V., Chinnam, N. B., Chiu, W., Fidelis, K., Grinter, R., Gupta, G. D., Hartmann, M. D., Hayes, C. S., Heidebrecht, T., Ilari, A., Joachimiak, A., Kim, Y., Linares, R., Lovering, A. L., Lunin, V. V., Lupas, A. N., Makbul, C., Michalska, K., Moult, J., Mukherjee, P. K., Nutt, W. S., Oliver, S. L., Perrakis, A., Stols, L., Tainer, J. A., Topf, M., Tsutakawa, S. E., Valdivia-Delgado, M. and Schwede, T. (2021) ‘Target highlights in CASP14: analysis of models by structure providers’, Proteins, pp. 1–26. doi: 10.1002/prot.26247.   
Robin, X., Haas, J., Gumienny, R., Smolinski, A., Tauriello, G. and Schwede, T. (2021) ‘Continuous Automated Model EvaluatiOn (CAMEO)-Perspectives on the future of fully automated evaluation of structure prediction methods’, Proteins, p. Epub ahead of print. doi: 10.1002/prot.26213.   
Kryshtafovych, A., Schwede, T., Topf, M., Fidelis, K. and Moult, J. (2021) ‘Critical assessment of methods of protein structure prediction (CASP)-Round XIV’, Proteins, pp. 1–11. doi: 10.1002/prot.26237.   
Coman Schmid, D., Crameri, K., Oesterle, S., Rinn, B., Sengstag, T., Stockinger, H. and BioMedIT network team (2020) ‘SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data’, Studies in health technology and informatics, 270, pp. 1170–1174. doi: 10.3233/SHTI200348.   edoc
Ham, A. S., Chojnowska, K., Tintignac, L. A., Lin, S., Schmidt, A., Ham, D. J., Sinnreich, M. and Rüegg, M. A. (2020) ‘mTORC1 signalling is not essential for the maintenance of muscle mass and function in adult sedentary mice’, Journal of cachexia, sarcopenia and muscle, 11(1), pp. 259–273. doi: 10.1002/jcsm.12505.   edoc
Castets, P., Ham, D. J. and Rüegg, M. A. (2020) ‘The TOR Pathway at the Neuromuscular Junction: More Than a Metabolic Player?’, Frontiers in molecular neuroscience, 13, p. 162. doi: 10.3389/fnmol.2020.00162.   
Righetto, R. D., Anton, L., Adaixo, R., Jakob, R. P., Zivanov, J., Mahi, M.-A., Ringler, P., Schwede, T., Maier, T. and Stahlberg, H. (2020) ‘Author Correction: High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica’, Nature communications, 11(1), p. 5873. doi: 10.1038/s41467-020-19845-z.   
Gervasoni, S., Vistoli, G., Talarico, C., Manelfi, C., Beccari, A. R., Studer, G., Tauriello, G., Waterhouse, A. M., Schwede, T. and Pedretti, A. (2020) ‘A Comprehensive Mapping of the Druggable Cavities within the SARS-CoV-2 Therapeutically Relevant Proteins by Combining Pocket and Docking Searches as Implemented in Pockets 2.0’, International journal of molecular sciences, 21(14), p. 5152. doi: 10.3390/ijms21145152.   
Pereira, J. A., Gerber, J., Ghidinelli, M., Gerber, D., Tortola, L., Ommer, A., Bachofner, S., Santarella, F., Tinelli, E., Lin, S., Rüegg, M. A., Kopf, M., Toyka, K. V. and Suter, U. (2020) ‘Mice carrying an analogous heterozygous Dynamin 2 K562E mutation that causes neuropathy in humans develop predominant characteristics of a primary myopathy’, Human molecular genetics, epub ahead of print, p. ddaa034. doi: 10.1093/hmg/ddaa034.   
Righetto, R. D., Anton, L., Adaixo, R., Jakob, R. P., Zivanov, J., Mahi, M.-A., Ringler, P., Schwede, T., Maier, T. and Stahlberg, H. (2020) ‘High-resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica’, Nature communications, 11(1), p. 5101. doi: 10.1038/s41467-020-18870-2.   
Bignucolo, O. and Bernèche, S. (2020) ‘The Voltage-Dependent Deactivation of the KvAP Channel Involves the Breakage of Its S4 Helix’, Frontiers in molecular biosciences, 7, p. 162. doi: 10.3389/fmolb.2020.00162.   
Ding, X., Willenborg, S., Bloch, W., Wickström, S. A., Wagle, P., Brodesser, S., Roers, A., Jais, A., Brüning, J. C., Hall, M. N., Rüegg, M. A. and Eming, S. A. (2019) ‘Epidermal mammalian target of rapamycin complex 2 controls lipid synthesis and filaggrin processing in epidermal barrier formation’, The Journal of Allergy & Clinical Immunology, 145(1), pp. 283–300.E8. doi: 10.1016/j.jaci.2019.07.033.   edoc
Studer, G., Rempfer, C., Waterhouse, A. M., Gumienny, R., Haas, J. and Schwede, T. (2019) ‘QMEANDisCo - Distance Constraints Applied on Model Quality Estimation’, Bioinformatics, 36(6), pp. 1765–1771. doi: 10.1093/bioinformatics/btz828.   edoc
Haas, J., Gumienny, R., Barbato, A., Ackermann, F., Tauriello, G., Bertoni, M., Studer, G., Smolinski, A. and Schwede, T. (2019) ‘Introducing “best single template” models as reference baseline for the Continuous Automated Model Evaluation (CAMEO)’, Proteins, 87(12), pp. 1378–1387. doi: 10.1002/prot.25815.   edoc
Kryshtafovych, A., Schwede, T., Topf, M., Fidelis, K. and Moult, J. (2019) ‘Critical assessment of methods of protein structure prediction (CASP)-Round XIII’, Proteins, 87(12), pp. 1011–1020. doi: 10.1002/prot.25823.   edoc
Berman, H. M., Adams, P. D., Bonvin, A. A., Burley, S. K., Carragher, B., Chiu, W., DiMaio, F., Ferrin, T. E., Gabanyi, M. J., Goddard, T. D., Griffin, P. R., Haas, J., Hanke, C. A., Hoch, J. C., Hummer, G., Kurisu, G., Lawson, C. L., Leitner, A., Markley, J. L., Meiler, J., Montelione, G. T., Phillips, G. N., Prisner, T., Rappsilber, J., Schriemer, D. C., Schwede, T., Seidel, C. A. M., Strutzenberg, T. S., Svergun, D. I., Tajkhorshid, E., Trewhella, J., Vallat, B., Velankar, S., Vuister, G. W., Webb, B., Westbrook, J. D., White, K. L. and Sali, A. (2019) ‘Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures’, Structure (London, England : 1993), 27(12), pp. 1745–1759. doi: 10.1016/j.str.2019.11.002.   edoc
Lepore, R., Kryshtafovych, A., Alahuhta, M., Veraszto, H. A., Bomble, Y. J., Bufton, J. C., Bullock, A. N., Caba, C., Cao, H., Davies, O. R., Desfosses, A., Dunne, M., Fidelis, K., Goulding, C. W., Gurusaran, M., Gutsche, I., Harding, C. J., Hartmann, M. D., Hayes, C. S., Joachimiak, A., Leiman, P. G., Loppnau, P., Lovering, A. L., Lunin, V. V., Michalska, K., Mir-Sanchis, I., Mitra, A., Moult, J., Phillips, G. N., Pinkas, D. M., Rice, P. A., Tong, Y., Topf, M., Walton, J. D. and Schwede, T. (2019) ‘Target highlights in CASP13: Experimental target structures through the eyes of their authors’, Proteins: Structure, Function, and Bioinformatics , 87(12), pp. 1037–1057. doi: 10.1002/prot.25805.   edoc
Donadon, I., Bussani, E., Riccardi, F., Licastro, D., Romano, G., Pianigiani, G., Pinotti, M., Kostantinova, P., Evers, M., Lin, S., Rüegg, M. A. and Pagani, F. (2019) ‘Rescue of spinal muscular atrophy mouse models with AAV9-Exon-specific U1 snRNA ’, Nucleic acids research, 47(14), pp. 7618–7632. doi: 10.1093/nar/gkz469.   edoc
Rion, N., Castets, P., Lin, S., Enderle, L., Reinhard, J. R. and Rüegg, M. A. (2019) ‘mTORC2 affects the maintenance of the muscle stem cell pool’, Skeletal Muscle, 9(1), p. 30. doi: 10.1186/s13395-019-0217-y.   edoc
Cheng, J., Choe, M.-H., Elofsson, A., Han, K.-S., Hou, J., Maghrabi, A. H. A., McGuffin, L. J., Menéndez-Hurtado, D., Olechnovič, K., Schwede, T., Studer, G., Uziela, K., Venclovas, Česlovas and Wallner, B. (2019) ‘Estimation of model accuracy in CASP13’, Proteins, 87(12), pp. 1361–1377. doi: 10.1002/prot.25767.   edoc
Delezie, J., Weihrauch, M., Maier, G., Tejero, R., Ham, D. J., Gill, J. F., Karrer-Cardel, B., Rüegg, M. A., Tabares, L. and Handschin, C. (2019) ‘BDNF is a mediator of glycolytic fiber-type specification in mouse skeletal muscle’, Proceedings of the National Academy of Sciences of the United States of America, 116(32), pp. 16111–16120. doi: 10.1073/pnas.1900544116.   edoc
Castets, P., Rion, N., Théodore, M., Falcetta, D., Lin, S., Reischl, M., Wild, F., Guérard, L., Eickhorst, C., Brockhoff, M., Guridi, M., Ibebunjo, C., Cruz, J., Sinnreich, M., Rudolf, R., Glass, D. J. and Rüegg, M. A. (2019) ‘mTORC1 and PKB/Akt control the muscle response to denervation by regulating autophagy and HDAC4’, Nature communications, 10(1), p. 3187. doi: 10.1038/s41467-019-11227-4.   edoc | Open Access
Rion, N., Castets, P., Lin, S., Enderle, L., Reinhard, J. R., Eickhorst, C. and Rüegg, M. A. (2019) ‘mTOR controls embryonic and adult myogenesis via mTORC1’, Development, 146(7), pp. 1–15. doi: 10.1242/dev.172460.   edoc | Open Access
Studer, G., Tauriello, G., Bienert, S., Waterhouse, A. M., Bertoni, M., Bordoli, L., Schwede, T. and Lepore, R. (2019) ‘Modeling of Protein Tertiary and Quaternary Structures Based on Evolutionary Information’, Methods in Molecular Biology, 1851, pp. 301–316. doi: 10.1007/978-1-4939-8736-8_17.   edoc
Haas, J., Barbato, A., Behringer, D., Studer, G., Roth, S., Bertoni, M., Mostaguir, K., Gumienny, R. and Schwede, T. (2018) ‘Continuous Automated Model Evaluation (CAMEO) Complementing the Critical Assessment of Structure Prediction in CASP12’, Proteins, 86 Suppl 1, pp. 387–398. doi: 10.1002/prot.25431.   edoc
Kryshtafovych, A., Monastyrskyy, B., Fidelis, K., Moult, J., Schwede, T. and Tramontano, A. (2018) ‘Evaluation of the template-based modeling in CASP12’, Proteins, 86 Suppl 1, pp. 321–334. doi: 10.1002/prot.25425.   edoc
Waterhouse, A., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R., Heer, F. T., de Beer, T. A. P., Rempfer, C., Bordoli, L., Lepore, R. and Schwede, T. (2018) ‘SWISS-MODEL: homology modelling of protein structures and complexes’, Nucleic acids research, 46(W1), pp. W296-W303. doi: 10.1093/nar/gky427.   edoc
Yurchenco, P. D., McKee, K. K., Reinhard, J. R. and Rüegg, M. A. (2018) ‘Laminin-deficient muscular dystrophy: Molecular pathogenesis and structural repair strategies’, Matrix biology : journal of the International Society for Matrix Biology, 71-72, pp. 174–187. doi: 10.1016/j.matbio.2017.11.009.   edoc
Zainul, Z., Heikkinen, A., Koivisto, H., Rautalahti, I., Kallio, M., Lin, S., Härönen, H., Norman, O., Rüegg, M. A., Tanila, H. and Pihlajaniemi, T. (2018) ‘Collagen XIII Is Required for Neuromuscular Synapse Regeneration and Functional Recovery after Peripheral Nerve Injury’, The Journal of neuroscience, 38(17), pp. 4243–4258. doi: 10.1523/JNEUROSCI.3119-17.2018.   edoc | Open Access
van Putten, M., Aartsma-Rus, A., Grounds, M. D., Kornegay, J. N., Mayhew, A., Gillingwater, T. H., Takeda, S., Rüegg, M. A., De Luca, A., Nagaraju, K. and Willmann, R. (2018) ‘Update on Standard Operating Procedures in Preclinical Research for DMD and SMA Report of TREAT-NMD Alliance Workshop, Schiphol Airport, 26 April 2015, The Netherlands’, Journal of Neuromuscular Diseases, 5(1), pp. 29–34. doi: 10.3233/JND-170288.   edoc | Open Access
Boido, M., De Amicis, E., Valsecchi, V., Trevisan, M., Ala, U., Ruegg, M. A., Hettwer, S. and Vercelli, A. (2018) ‘Increasing Agrin Function Antagonizes Muscle Atrophy and Motor Impairment in Spinal Muscular Atrophy’, Frontiers in cellular neuroscience, 12, p. 17. doi: 10.3389/fncel.2018.00017.   edoc | Open Access
Moult, J., Fidelis, K., Kryshtafovych, A. and Schwede, T. (2018) ‘A tribute to Anna Tramontano (1957-2017)’, Proteins: Structure, Function, and Bioinformatics , 86(1), pp. 5–6. doi: 10.1002/prot.25406.   edoc | Open Access
Lafita, A., Bliven, S., Kryshtafovych, A., Bertoni, M., Monastyrskyy, B., Duarte, J. M., Schwede, T. and Capitani, G. (2018) ‘Assessment of protein assembly prediction in CASP12’, Proteins: Structure, Function, and Bioinformatics , 86(1), pp. 247–256. doi: 10.1002/prot.25408.   edoc
Moult, J., Fidelis, K., Kryshtafovych, A., Schwede, T. and Tramontano, A. (2018) ‘Critical assessment of methods of protein structure prediction (CASP) - Round XII’, Proteins: Structure, Function, and Bioinformatics , 86(1), pp. 7–15. doi: 10.1002/prot.25415.   edoc
Kryshtafovych, A., Albrecht, R., Baslé, A., Bule, P., Caputo, A. T., Carvalho, A. L., Chao, K. L., Diskin, R., Fidelis, K., Fontes, C. M. G. A., Fredslund, F., Gilbert, H. J., Goulding, C. W., Hartmann, M. D., Hayes, C. S., Herzberg, O., Hill, J. C., Joachimiak, A., Kohring, G.-W., Koning, R. I., Lo Leggio, L., Mangiagalli, M., Michalska, K., Moult, J., Najmudin, S., Nardini, M., Nardone, V., Ndeh, D., Nguyen, T.-H., Pintacuda, G., Postel, S., van Raaij, M. J., Roversi, P., Shimon, A., Singh, A. K., Sundberg, E. J., Tars, K., Zitzmann, N. and Schwede, T. (2018) ‘Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016)’, Proteins: Structure, Function, and Bioinformatics , 86(1), pp. 27–50. doi: 10.1002/prot.25392.   edoc | Open Access
Xu, Y., Vien, M., Liang, C., Accardi, A. and Berneche, S. (2017) ‘Molecular Mechanism of Cl-/H+ Coupling in a CLC Antiporter’, Biophysical Journal. Cell Press. doi: 10.1016/j.bpj.2016.11.1819.   edoc
Johner, N. B. and Berneche, S. (2017) ‘Effect of Membrane Composition on Ion Conduction in a Voltage-Gated Potassium Channel’, Biophysical Journal. Cell Press. doi: 10.1016/j.bpj.2016.11.2930.   edoc
Glusman, G., Rose, P. W., Prlić, A., Dougherty, J., Duarte, J. M., Hoffman, A. S., Barton, G. J., Bendixen, E., Bergquist, T., Bock, C., Brunk, E., Buljan, M., Burley, S. K., Cai, B., Carter, H., Gao, J., Godzik, A., Heuer, M., Hicks, M., Hrabe, T., Karchin, R., Leman, J. K., Lane, L., Masica, D. L., Mooney, S. D., Moult, J., Omenn, G. S., Pearl, F., Pejaver, V., Reynolds, S. M., Rokem, A., Schwede, T., Song, S., Tilgner, H., Valasatava, Y., Zhang, Y. and Deutsch, E. W. (2017) ‘Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework’, Genome medicine, 9(1), p. 113. doi: 10.1186/s13073-017-0509-y.   edoc
Karakatsani, A., Marichal, N., Urban, S., Kalamakis, G., Ghanem, A., Schick, A., Zhang, Y., Conzelmann, K.-K., Rüegg, M. A., Berninger, B., Ruiz de Almodovar, C., Gascón, S. and Kröger, S. (2017) ‘Neuronal LRP4 regulates synapse formation in the developing CNS’, Development, 144(24), pp. 4604–4615. doi: 10.1242/dev.150110.   edoc | Open Access
Heer, F. T., Posson, D. J., Wojtas-Niziurski, W., Nimigean, C. M. and Bernèche, S. (2017) ‘Mechanism of activation at the selectivity filter of the KcsA K(+) channel’, eLife, 6, p. e25844. doi: 10.7554/eLife.25844.   edoc | Open Access
Hodson, N., McGlory, C., Oikawa, S. Y., Jeromson, S., Song, Z., Ruegg, M. A., Hamilton, D. L., Phillips, S. M. and Philp, A. (2017) ‘Differential localisation and anabolic responsiveness of mTOR complexes in human skeletal muscle in response to feeding and exercise’, American Journal of Physiology - Cell Physiology, 313(6), pp. C604-C611. doi: 10.1152/ajpcell.00176.2017.   edoc | Open Access
Bozadjieva, N., Blandino-Rosano, M., Chase, J., Dai, X.-Q., Cummings, K., Gimeno, J., Dean, D., Powers, A. C., Gittes, G. K., Rüegg, M. A., Hall, M. N., MacDonald, P. E. and Bernal-Mizrachi, E. (2017) ‘Loss of mTORC1 signaling alters pancreatic α cell mass and impairs glucagon secretion’, The Journal of Clinical Investigation, 127(12), pp. 4379–4393. doi: 10.1172/JCI90004.   edoc | Open Access
Kryshtafovych, A., Monastyrskyy, B., Fidelis, K., Schwede, T. and Tramontano, A. (2017) ‘Assessment of model accuracy estimations in CASP12’, Proteins, 86(S1), pp. 345–360. doi: 10.1002/prot.25371.   edoc
Burley, S. K., Kurisu, G., Markley, J. L., Nakamura, H., Velankar, S., Berman, H. M., Sali, A., Schwede, T. and Trewhella, J. (2017) ‘PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models’, Structure , 25(9), pp. 1317–1318. doi: 10.1016/j.str.2017.08.001.   edoc
Daina, A., Blatter, M.-C., Baillie Gerritsen, V., Palagi, P. M., Marek, D., Xenarios, I., Schwede, T., Michielin, O. and Zoete, V. (2017) ‘Drug Design Workshop: A Web-Based Educational Tool To Introduce Computer-Aided Drug Design to the General Public’, Journal of Chemical Education, 94(3), pp. 335–344. doi: 10.1021/acs.jchemed.6b00596.   edoc
Thornton, J. M., Valencia, A. and Schwede, T. (2017) ‘Anna Tramontano 1957-2017’, Nature Structural and Molecular Biology, 24(5), pp. 431–432. doi: 10.1038/nsmb.3410.   edoc
Bertoni, M., Kiefer, F., Biasini, M., Bordoli, L. and Schwede, T. (2017) ‘Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology’, Scientific Reports, 7(1), p. 10480. doi: 10.1038/s41598-017-09654-8.   edoc
Vullo, S., Bonifacio, G., Roy, S., Johner, N., Bernèche, S. and Kellenberger, S. (2017) ‘Conformational dynamics and role of the acidic pocket in ASIC pH-dependent gating’, Proceedings of the National Academy of Sciences of the United States of America, 114(14), pp. 3768–3773. doi: 10.1073/pnas.1620560114.   edoc
Trewhella, J., Duff, A. P., Durand, D., Gabel, F., Guss, J. M., Hendrickson, W. A., Hura, G. L., Jacques, D. A., Kirby, N. M., Kwan, A. H., P`erez, J., Pollack, L., Ryan, T. M., Sali, A., Schneidman-Duhovny, D., Schwede, T., Svergun, D. I., Sugiyama, M., Tainer, J. A., Vachette, P., Westbrook, J. and Whitten, A. E. (2017) ‘2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update’, Acta Crystallographica Section D, 73(9), pp. 710–728. doi: 10.1107/S2059798317011597.   edoc
Sprecher, K. S., Hug, I., Nesper, J., Potthoff, E., Mahi, M.-A., Sangermani, M., Kaever, V., Schwede, T., Vorholt, J. and Jenal, U. (2017) ‘Cohesive Properties of the Caulobacter crescentus Holdfast Adhesin Are Regulated by a Novel c-di-GMP Effector Protein’, mBio, 8(2), pp. e00294–17. doi: 10.1128/mBio.00294-17.   edoc | Open Access
Romano, V., de Beer, T. A. P. and Schwede, T. (2017) ‘A computational protocol to evaluate the effects of protein mutants in the kinase gatekeeper position on the binding of ATP substrate analogues’, BMC Research Notes, 10(1), p. 104. doi: 10.1186/s13104-017-2428-9.   edoc
Starek, G., Freites, J. A., Bernèche, S. and Tobias, D. J. (2017) ‘Gating energetics of a voltage-dependent K(+) channel pore domain’, Journal of Computational Chemistry, 38(16), pp. 1472–1478. doi: 10.1002/jcc.24742.   edoc
Bienert, S., Waterhouse, A., de Beer, T. A. P., Tauriello, G., Studer, G., Bordoli, L. and Schwede, T. (2017) ‘The SWISS-MODEL Repository - new features and functionality’, Nucleic Acids Research, 45(D1), pp. D313-D319. doi: 10.1093/nar/gkw1132.   edoc | Open Access
Moult, J., Fidelis, K., Kryshtafovych, A., Schwede, T. and Tramontano, A. (2016) ‘Critical assessment of methods of protein structure prediction (CASP) - progress and new directions in Round XI’, Proteins. Wiley-Liss, pp. 4–14. doi: 10.1002/prot.25064.   edoc
Swiss Institute of Bioinformatics Members, S. (2016) ‘The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases’, Nucleic acids research, 44(D1), pp. D27-D37. doi: 10.1093/nar/gkv1310.   edoc | Open Access
Nicolet, S., Goldenberger, D., Schwede, T., Page, M. and Creus, M. (2016) ‘Plasmid-mediated colistin resistance in a patient infected with Klebsiella pneumoniae’, The Lancet Infectious Diseases. Elsevier, pp. 998–999. doi: 10.1016/S1473-3099(16)30197-9.   edoc
Moult, J., Fidelis, K., Kryshtafovych, A., Schwede, T. and Tramontano, A. (2016) ‘Critical assessment of methods of protein structure prediction: Progress and new directions in round XI’, Proteins: Structure, Function, and Bioinformatics , 84(1), pp. 4–14. doi: 10.1002/prot.25064.   edoc
Kryshtafovych, A., Moult, J., Baslé, A., Burgin, A., Craig, T. K., Edwards, R. A., Fass, D., Hartmann, M. D., Korycinski, M., Lewis, R. J., Lorimer, D., Lupas, A. N., Newman, J., Peat, T. S., Piepenbrink, K. H., Prahlad, J., van Raaij, M. J., Rohwer, F., Segall, A. M., Seguritan, V., Sundberg, E. J., Singh, A. K., Wilson, M. A. and Schwede, T. (2016) ‘Some of the most interesting CASP11 targets through the eyes of their authors’, Proteins: Structure, Function, and Bioinformatics , 84(1), pp. 34–50. doi: 10.1002/prot.24942.   edoc
Auffray, C., Balling, R., Barroso, I., Bencze, L., Benson, M., Bergeron, J., Bernal-Delgado, E., Blomberg, N., Bock, C., Conesa, A., Del Signore, S., Delogne, C., Devilee, P., Di Meglio, A., Eijkemans, M., Flicek, P., Graf, N., Grimm, V., Guchelaar, H.-J., Guo, Y.-K., Gut, I. G., Hanbury, A., Hanif, S., Hilgers, R.-D., Honrado, Ángel, Hose, D. R., Houwing-Duistermaat, J., Hubbard, T., Janacek, S. H., Karanikas, H., Kievits, T., Kohler, M., Kremer, A., Lanfear, J., Lengauer, T., Maes, E., Meert, T., Müller, W., Nickel, D., Oledzki, P., Pedersen, B., Petkovic, M., Pliakos, K., Rattray, M., I. Màs, J. R., Schneider, R., Sengstag, T., Serra-Picamal, X., Spek, W., Vaas, L. A. I., van Batenburg, O., Vandelaer, M., Varnai, P., Villoslada, P., Vizcaíno, J. A., Wubbe, J. P. M. and Zanetti, G. (2016) ‘Making sense of big data in health research: Towards an EU action plan’, Genome medicine, 8(1), p. 71. doi: 10.1186/s13073-016-0323-y.   edoc
Kryshtafovych, A., Barbato, A., Monastyrskyy, B., Fidelis, K., Schwede, T. and Tramontano, A. (2016) ‘Methods of model accuracy estimation can help selecting the best models from decoy sets: assessment of model accuracy estimations in CASP11’, Proteins: Structure, Function, and Bioinformatics , 84(1), pp. 349–369. doi: 10.1002/prot.24919.   edoc
Sali, A., Berman, H. M., Schwede, T., Trewhella, J., Kleywegt, G., Burley, S. K., Markley, J., Nakamura, H., Adams, P., Bonvin, A. M. J. J., Chiu, W., Peraro, M. D., Di Maio, F., Ferrin, T. E., Grünewald, K., Gutmanas, A., Henderson, R., Hummer, G., Iwasaki, K., Johnson, G., Lawson, C. L., Meiler, J., Marti-Renom, M. A., Montelione, G. T., Nilges, M., Nussinov, R., Patwardhan, A., Rappsilber, J., Read, R. J., Saibil, H., Schröder, G. F., Schwieters, C. D., Seidel, C. A. M., Svergun, D., Topf, M., Ulrich, E. L., Velankar, S. and Westbrook, J. D. (2015) ‘Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop’, Structure: with folding and design, Vol. 23, H. 7, pp. 1156–1167. doi: 10.1016/j.str.2015.05.013.   edoc | Open Access
Ihssen, J., Haas, J., Kowarik, M., Wiesli, L., Wacker, M., Schwede, T. and Thöny-Meyer, L. (2015) ‘Increased efficiency of Campylobacter jejuni N-oligosaccharyltransferase PglB by structure-guided engineering’, Open biology, Vol. 5, H. 4 , 140227. doi: 10.1098/rsob.140227.   edoc
Berman, H. M., Gabanyi, M. J., Groom, C. R., Johnson, J. E., Murshudov, G. N., Nicholls, R. A., Reddy, V., Schwede, T., Zimmerman, M. D., Westbrook, J. and Minor, W. (2015) ‘Data to knowledge: how to get meaning from your result’, IUCrJ, Vol. 2, H. 1, pp. 45–58. doi: 10.1107/S2052252514023306.   edoc
Haas, J. and Schwede, T. (2014) ‘Unabhängige Validierung von Methoden zur Proteinstrukturvorhersage’, Biospektrum, 20(2), pp. 236–237. doi: 10.1007/s12268-014-0432-3.   edoc
Uda, N. R., Upert, G., Angelici, G., Nicolet, S., Schmidt, T., Schwede, T. and Creus, M. (2014) ‘Zinc-selective inhibition of the promiscuous bacterial amide-hydrolase DapE: implications of metal heterogeneity for evolution and antibiotic drug design’, Metallomics, 6(1), pp. 88–95. doi: 10.1039/c3mt00125c.   edoc | Open Access
Studer, G., Biasini, M. and Schwede, T. (2014) ‘Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane)’, Bioinformatics, Vol. 30, H. 17 , i505-i511. doi: 10.1093/bioinformatics/btu457.   edoc
Stockinger, H., Altenhoff, A. M., Arnold, K., Bairoch, A., Bastian, F., Bergmann, S., Bougueleret, L., Bucher, P., Delorenzi, M., Lane, L., Mercier, P. L., Lisacek, F., Michielin, O., Palagi, P. M., Rougemont, J., Schwede, T., Mering, C. von, Nimwegen, E. van, Walther, D., Xenarios, I., Zavolan, M., Zdobnov, E. M., Zoete, V. and Appel, R. D. (2014) ‘Fifteen years SIB Swiss Institute of Bioinformatics : life science databases, tools and support’, Nucleic Acids Research, 42(W1), pp. W436-W441. doi: 10.1093/nar/gku380.   edoc | Open Access
Biasini, M., Bienert, S., Waterhouse, A., Arnold, K., Studer, G., Schmidt, T., Kiefer, F., Cassarino, T. G., Bertoni, M., Bordoli, L. and Schwede, T. (2014) ‘SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information’, Nucleic Acids Research, 42(W1), pp. W252-W258. doi: 10.1093/nar/gku340.   edoc | Open Access
Schmidt, T., Bergner, A. and Schwede, T. (2014) ‘Modelling three-dimensional protein structures for applications in drug design’, Drug discovery today, Vol. 19, H. 7, pp. 890–897. doi: 10.1016/j.drudis.2013.10.027.   edoc
Schmidt, T. B., Schwede, T. and Meuwly, M. (2014) ‘Computational Analysis of Methyltransfer Reactions in Dengue Virus Methyltransferase’, Journal of Physical Chemistry B, 118(22), pp. 5882–5890. doi: 10.1021/jp5028564.   edoc
Kryshtafovych, A., Moult, J., Bales, P., Bazan, J. F., Biasini, M., Burgin, A., Chen, C., Cochran, F. V., Craig, T. K., Das, R., Fass, D., Garcia-Doval, C., Herzberg, O., Lorimer, D., Luecke, H., Ma, X., Nelson, D. C., van Raaij, M. J., Rohwer, F., Segall, A., Seguritan, V., Zeth, K. and Schwede, T. (2014) ‘Challenging the state-of-the-art in protein structure prediction : highlights of experimental target structures for the 10(th) Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10’, Proteins, Vol. 82, Suppl. S2, pp. 26–42. doi: 10.1002/prot.24489.   edoc
Kryshtafovych, A., Barbato, A., Fidelis, K., Monastyrskyy, B., Schwede, T. and Tramontano, A. (2014) ‘Assessment of the assessment : evaluation of the model quality estimates in CASP10’, Proteins, Vol. 82, Suppl. S2, pp. 112–126. doi: 10.1002/prot.24347.   edoc
Cassarino, T. G., Bordoli, L. and Schwede, T. (2014) ‘Assessment of ligand binding site predictions in CASP10’, Proteins, Vol. 82, Suppl. 2, pp. 154–163. doi: 10.1002/prot.24495.   edoc
Moult, J., Fidelis, K., Kryshtafovych, A., Schwede, T. and Tramontano, A. (2014) ‘Critical assessment of methods of protein structure prediction (CASP) - round X’, Proteins, Vol. 82, Suppl. S2 , S. 1–6. doi: 10.1002/prot.24452.   edoc
Mariani, V., Biasini, M., Barbato, A. and Schwede, T. (2013) ‘lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests’, Bioinformatics, Vol. 29, H. 21, pp. 2722–2728. doi: 10.1093/bioinformatics/btt473.   edoc
Schwede, T. (2013) ‘Homology Modeling of Protein Structures’, Encyclopedia of Biophysics. dited by . G. . Roberts. Berlin: Springer. doi: 10.1007/978-3-642-16712-6_417.   edoc
Schwede, T. (2013) ‘Protein modeling: what happened to the “protein structure gap”?’, Structure: with folding and design, Vol. 21, H. 9, pp. 1531–1540. doi: 10.1016/j.str.2013.08.007.   edoc
Trewhella, J., Hendrickson, W. A., Kleywegt, G. J., Sali, A., Sato, M., Schwede, T., Svergun, D. I., Tainer, J. A., Westbrook, J. and Berman, H. M. (2013) ‘Report of the wwPDB Small-Angle Scattering Task Force : data requirements for biomolecular modeling and the PDB’, Structure: with folding and design, Vol. 21, H. 6, pp. 875–881. doi: 10.1016/j.str.2013.04.020.   edoc
Haas, J., Roth, S., Arnold, K., Kiefer, F., Schmidt, T., Bordoli, L. and Schwede, T. (2013) ‘The Protein Model Portal: a comprehensive resource for protein structure and model information’, Database, 2013, bat031. doi: 10.1093/database/bat031.   edoc
Biasini, M., Schmidt, T., Bienert, S., Mariani, V., Studer, G., Haas, J., Johner, N., Schenk, A. D., Philippsen, A. and Schwede, T. (2013) ‘OpenStructure : an integrated software framework for computational structural biology’, Acta crystallographica. Section D, Biological crystallography, Vol. 69, Pt. 5, pp. 701–709. doi: 10.1107/S0907444913007051.   edoc
Barbato, A., Benkert, P., Schwede, T., Tramontano, A. and Kosinski, J. (2012) ‘Improving your target-template alignment with MODalign’, Bioinformatics , 28(7), pp. 1038–1039. doi: 10.1093/bioinformatics/bts070.   edoc
Schwede, T. and Iber, D. (2012) ‘ECCB 2012 : The 11th European Conference on Computational Biology’, Bioinformatics. Oxford University Press. doi: 10.1093/bioinformatics/bts490.   edoc
Bordoli, L. and Schwede, T. (2012) ‘Automated Protein Structure Modeling with SWISS-MODEL Workspace and the Protein Model Portal’, in Homology Modeling: Methods and Protocols. New York, USA: Humana Press, pp. 107–136. doi: 10.1007/978-1-61779-588-6_5.   edoc
Kryshtafovych, A., Moult, J., Bartual, S. G., Bazan, J. F., Berman, H., Casteel, D. E., Christodoulou, E., Everett, J. K., Hausmann, J., Heidebrecht, T., Hills, T., Hui, R., Hunt, J. F., Seetharaman, J., Joachimiak, A., Kennedy, M. A., Kim, C., Lingel, A., Michalska, K., Montelione, G. T., Otero, J. M., Perrakis, A., Pizarro, J. C., van Raaij, M. J., Ramelot, T. A., Rousseau, F., Tong, L., Wernimont, A. K., Young, J. and Schwede, T. (2011) ‘Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction’, Proteins: Structure, Function, and Bioinformatics , 79(S10), pp. 6–20. doi: 10.1002/prot.23196.   edoc
Kinch, L. N., Shi, S., Cheng, H., Cong, Q., Pei, J., Mariani, V., Schwede, T. and Grishin, N. V. (2011) ‘CASP9 target classification’, Proteins, Vol. 79, H. 10, pp. 21–36. doi: 10.1002/prot.23190.   edoc
Schmidt, T., Haas, J., Cassarino, T. G. and Schwede, T. (2011) ‘Assessment of ligand-binding residue predictions in CASP9’, Proteins, Vol. 79, H. 10, pp. 126–136. doi: 10.1002/prot.23174.   edoc
Benkert, P., Biasini, M. and Schwede, T. (2011) ‘Toward the estimation of the absolute quality of individual protein structure models’, Bioinformatics, Vol. 27, H. 3, pp. 343–350. doi: 10.1093/bioinformatics/btq662.   edoc
Mariani, V., Kiefer, F., Schmidt, T., Haas, J. and Schwede, T. (2011) ‘Assessment of template based protein structure predictions in CASP9’, Proteins, Vol. 79, H. 10, pp. 37–58. doi: 10.1002/prot.23177.   edoc
Baud, O., Etter, S., Spreafico, M., Bordoli, L., Schwede, T., Vogel, H. and Pick, H. M. (2011) ‘The Mouse Eugenol Odorant Receptor : Structural and Functional Plasticity of a Broadly Tuned Odorant Binding Pocket’, Biochemistry, Vol. 50, H. 5, pp. 843–853. doi: 10.1021/bi1017396.   edoc
Gabanyi, M. J., Adams, P. D., Arnold, K., Bordoli, L., Carter, L. G., Flippen-Andersen, J., Gifford, L., Haas, J., Kouranov, A., McLaughlin, W. A., Micallef, D. I., Minor, W., Shah, R., Schwede, T., Tao, Y. P., Westbrook, J. D., Zimmerman, M. and Berman, H. M. (2011) ‘The Structural Biology Knowledgebase : a portal to protein structures, sequences, functions, and methods’, Journal of structural and functional genomics, Vol. 12, H. 2, pp. 45–54. doi: 10.1007/s10969-011-9106-2.   edoc
Haas, J. and Schwede, T. (2010) ‘Protein Homology Modelling - Providing Three-dimensional Models for Proteins where Experimental Data is Missing’, ERCIM News, Vol. 82, pp. 20–21.   edoc
Biasini, M., Mariani, V., Haas, J., Scheuber, S., Schenk, A., Schwede, T. and Philippsen, A. (2010) ‘OpenStructure: a flexible software framework for computational structural biology’, Bioinformatics, 26(20), pp. 2626–2628. doi: 10.1093/bioinformatics/btq481.   edoc
Podvinec, M., Lim, S. P., Schmidt, T. B., Scarsi, M., Wen, D., Sonntag, L. S., Sanschagrin, P., Shenkin, P. S. and Schwede, T. (2010) ‘Novel Inhibitors of Dengue Virus Methyltransferase : discovery by in vitro-driven virtual screening on a Desktop Computer Grid’, Journal of Medicinal Chemistry, Vol. 53, H. 4, pp. 1483–1495. doi: 10.1021/jm900776m.   edoc
Duerig, A., Abel, S., Folcher, M., Nicollier, M., Schwede, T., Amiot, N., Giese, B. and Jenal, U. (2009) ‘Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression’, Genes & development, Vol. 23, H. 1, pp. 93–104. doi: 10.1101/gad.502409.   edoc
Schwede, T. and Peitsch, M. C. (2009) ‘Protein Structure Modeling and Docking at the Swiss Institute of Bioinformatics’, in Bioinformatics. A Swiss Perspective. New Jersey: World Scientific, pp. 219–246.   edoc
Bordoli, L., Kiefer, F., Arnold, K., Benkert, P., Battey, J. and Schwede, T. (2009) ‘Protein structure homology modelling using SWISS-MODEL Workspace’, Nature Protocols, Vol. 4, H. 1, pp. 1–13. doi: 10.1038/nprot.2008.197.   edoc
Benkert, P., Schwede, T. and Tosatto, S. C. (2009) ‘QMEANclust : estimation of protein model quality by combining a composite scoring function with structural density information’, BMC Structural Biology, Vol. 9 , 35. doi: 10.1186/1472-6807-9-35.   edoc
Arnold, K., Kiefer, F., Kopp, J., Battey, J. N., Podvinec, M., Westbrook, J. D., Berman, H. M., Bordoli, L. and Schwede, T. (2009) ‘The protein model portal’, Journal of structural and functional genomics, 10(1), pp. 1–8. doi: 10.1007/s10969-008-9048-5.   edoc | Open Access
Schwede, T., Sali, A., Honig, B., Levitt, M., Berman, H. M., Jones, D., Brenner, S. E., Burley, S. K., Das, R., Dokholyan, N. V., Dunbrack, R. L. J., Fidelis, K., Fiser, A., Godzik, A., Huang, Y. J., Humblet, C., Jacobson, M. P., Joachimiak, A., Krystek, S. R. J., Kortemme, T., Kryshtafovych, A., Montelione, G. T., Moult, J., Murray, D., Sanchez, R., Sosnick, T. R., Standley, D. M., Stouch, T., Vajda, S., Vasquez, M., Westbrook, J. D. and Wilson, I. A. (2009) ‘Outcome of a workshop on applications of protein models in biomedical research’, Structure, Vol. 17, H. 2, pp. 151–159.   edoc
Berman, H. M., Westbrook, J. D., Gabanyi, M. J., Tao, W., Shah, R., Kouranov, A., Schwede, T., Arnold, K., Kiefer, F., Bordoli, L., Kopp, J., Podvinec, M., Adams, P. D., Carter, L. G., Minor, W., Nair, R. and Baer, J. L. (2009) ‘The protein structure initiative structural genomics knowledgebase’, Nucleic Acids Research, 37(1 Supplement), pp. D365-D368. doi: 10.1093/nar/gkn790.   edoc | Open Access
Benkert, P., Kunzli, M. and Schwede, T. (2009) ‘QMEAN server for protein model quality estimation’, Nucleic Acids Research, 37(2 Supplement), pp. W510-W514. doi: 10.1093/nar/gkp322.   edoc | Open Access
Pick, H., Etter, S., Baud, O., Schmauder, R., Bordoli, L., Schwede, T. and Vogel, H. (2009) ‘Dual activities of odorants on olfactory and nuclear hormone receptors’, Journal of biological chemistry, Vol. 284, H. 44, pp. 30547–30555.   edoc
Guex, N., Peitsch, M. C. and Schwede, T. (2009) ‘Automated comparative protein structure modeling with Swiss-model and Swiss-PdbViewer : a historical perspective’, Electrophoresis, Vol. 30, H. S1, pp. 162–173.   edoc
Kiefer, F., Arnold, K., Kunzli, M., Bordoli, L. and Schwede, T. (2009) ‘The Swiss-model Repository and associated resources’, Nucleic Acids Research, 37(1 Supplement), pp. D387-D392. doi: 10.1093/nar/gkn750.   edoc | Open Access
Benkert, P., Tosatto, S. C. and Schwede, T. (2009) ‘Global and local model quality estimation at CASP8 using the scoring functions QMEAN and QMEANclust’, Proteins, Vol. 77, H. S9, pp. 173–180.   edoc
Schwede, T., Sali, A., Eswar, N. and Peitsch, M. C. (2008) ‘Protein Structure Modeling’, in Computational structural biology. Singapore: World Scientific, p. 700.   edoc
Podvinec, M., Schwede, T. and Peitsch, M. C. (2008) ‘Docking for neglected diseases as community efforts’, in Computational structural biology. Singapore: World Scientific Publishing, pp. 683–704.   edoc
Zosso, D., Podvinec, M., Muller, M., Aebersold, R., Peitsch, M. C. and Schwede, T. (2007) ‘Tandem mass spectrometry protein identification on a PC grid’, Studies in health technology and informatics, Vol. 126, pp. 3–12.   edoc
Zosso, D., Arnold, K., Schwede, T. and Podvinec, M. (2007) ‘SWISS-TANDEM : a Web-based workspace for MS/MS protein identification on PC grid’, in Twentieth IEEE international symposium on computer-based medical systems. Los Alamitos, Calif.: IEEE Computer Society, pp. 406–411. doi: 10.1109/CBMS.2007.103.   edoc
Scarsi, M., Podvinec, M., Roth, A., Hug, H., Kersten, S., Albrecht, H., Schwede, T., Meyer, U. A. and Rucker, C. (2007) ‘Sulfonylureas and glinides exhibit peroxisome proliferator-activated receptor gamma activity : a combined virtual screening and biological assay approach’, Molecular pharmacology, Vol. 71, H. 2, pp. 398–406. doi: 10.1124/mol.106.024596.   edoc
Michelsen, K., Schmid, V., Metz, J., Heusser, K., Liebel, U., Schwede, T., Spang, A. and Schwappach, B. (2007) ‘Novel cargo-binding site in the beta and delta subunits of coatomer’, The Journal of cell biology, Vol. 179, H. 2, pp. 209–217. doi: 10.1083/jcb.200704142.   edoc | Open Access
Junne, T., Schwede, T., Goder, V. and Spiess, M. (2007) ‘Mutations in the Sec61p channel affecting signal sequence recognition and membrane protein topology’, Journal of biological chemistry, Vol. 282, H. 45, pp. 33201–33209. doi: 10.1074/jbc.M707219200.   edoc
Bordoli, L., Kiefer, F. and Schwede, T. (2007) ‘Assessment of disorder predictions in CASP7’, Proteins, Vol. 69 Suppl 8, pp. 129–136.   edoc
Clarke, N. D., Ezkurdia, I., Kopp, J., Read, R. J., Schwede, T. and Tress, M. (2007) ‘Domain Definition and Target Classification for CASP7’, Proteins, Vol. 69, H. S8, pp. 10–18.   edoc
Kopp, J., Bordoli, L., Battey, J. N. D., Kiefer, F. and Schwede, T. (2007) ‘Assessment of CASP7 predictions for template-based modeling targets’, Proteins, Vol. 69 Suppl 8, pp. 38–56.   edoc
Battey, J. N. D., Kopp, J., Bordoli, L., Read, R. J., Clarke, N. D. and Schwede, T. (2007) ‘Automated server predictions in CASP7’, Proteins, Vol. 69 Suppl 8, pp. 68–82.   edoc
Berman, H. M., Burley, S. K., Chiu, W., Sali, A., Adzhubei, A., Bourne, P. E., Bryant, S. H., Dunbrack, R. L., Fidelis, K., Frank, J., Godzik, A., Henrick, K., Joachimiak, A., Heymann, B., Jones, D., Markley, J. L., Moult, J., Montelione, G. T., Orengo, C., Rossmann, M. G., Rost, B., Saibil, H., Schwede, T., Standley, D. M. and Westbrook, J. D. (2006) ‘Outcome of a workshop on archiving structural models of biological macromolecules’, Structure: with folding and design, Vol. 14, H. 8, pp. 1211–1217.   edoc
Podvinec, M., Maffioletti, S., Kunszt, P., Arnold, K., Cerutti, L., Nyffeler, B., Schlapbach, R., Turker, C., Stockinger, H., Thomas, A. J., Peitsch, M. C. and Schwede, T. (2006) ‘The SwissBioGrid Project : objectives, preliminary results and lessons learned’, in e-Science 2006 : 2nd IEEE International Conference on e-Science and Grid Computing. Los Alamitos, Calif.: IEEE Computer Society. doi: 10.1109/E-SCIENCE.2006.261081.   edoc
Kopp, J. and Schwede, T. (2006) ‘The Swiss-model Repository : new features and functionalities’, Nucleic Acids Research, 34(D1), pp. D315-D318. doi: 10.1093/nar/gkw1132.   edoc | Open Access
Arnold, K., Bordoli, L., Kopp, J. and Schwede, T. (2006) ‘The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling’, Bioinformatics, Vol. 22, H. 2, pp. 195–201.   edoc
Junne, T., Schwede, T., Goder, V. and Spiess, M. (2006) ‘The plug domain of yeast Sec61p is important for efficient protein translocation, but is not essential for cell viability’, Molecular Biology of the Cell, 17(9), pp. 4063–4068. doi: 10.1091/mbc.E06-03-0200.   edoc | Open Access
Thorsteinsdottir, H. B., Schwede, T., Zoete, V. and Meuwly, M. (2006) ‘How inaccuracies in protein structure models affect estimates of protein-ligand interactions : computational analysis of HIV-I protease inhibitor binding’, Proteins, 65(2), pp. 407–423. doi: 10.1002/prot.21096.   edoc
Kopp, J. and Schwede, T. (2004) ‘Automated protein structure homology modeling : a progress report’, Pharmacogenomics, Vol. 5, H. 4, pp. 405–416.   edoc
Kopp, J. and Schwede, T. (2004) ‘The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models’, Nucleic Acids Research, 32(1 Supplement), pp. D230-D234. doi: 10.1093/nar/gkh008.   edoc | Open Access
Fritzsche, H. B., Schwede, T. and Schulz, G. E. (2003) ‘Covalent and three-dimensional structure of the cyclodextrinase from Flavobacterium sp. no. 92’, European journal of biochemistry, Vol. 270, H. 10, pp. 2332–2341.   edoc
Deutsch, S., Rideau, A., Bochaton-Piallat, M.-L., Merla, G., Geinoz, A. ., Gabbiani, G., Schwede, T., Matthes, T., Antonarakis, S. E. and Beris, P. (2003) ‘Asp1424Asn MYH9 mutation results in an unstable protein responsible for the phenotypes in May-Hegglin anomaly/Fechtner syndrome’, Blood, Vol. 102, pp. 529–534. doi: 10.1182/blood-2002-09-2783 .   edoc
Schwede, T., Kopp, J., Guex, N. and Peitsch, M. C. (2003) ‘Swiss-model : an automated protein homology-modeling server’, Nucleic Acids Research, 31(13), pp. 3381–3385. doi: 10.1093/nar/gkg520 .   edoc | Open Access
Guex, N., Schwede, T. and Peitsch, M. C. (2002) ‘Imaging science in biochemistry’, in Encyclopedia of imaging science and technology. New York: John Wiley & Sons. doi: 10.1002/0471443395.img052.   edoc
Peitsch, M. C., Schwede, T., Diemand, A. and Guex, N. (2002) ‘Protein homology modeling’, Nature encyclopedia of the human genome, Vol. 4.   edoc
Kopp, J., Peitsch, M. C. and Schwede, T. (2002) ‘Protein Structure Modeling in Functional Genomics’, in Frontiers in Computational Genomics. Horizon Scientific Press.   edoc
Wattenhofer, M., Di Iorio, M. V., Rabionet, R., Dougherty, L., Pampanos, A., Schwede, T., Montserrat-Sentis, B., Arbones, M. L., Iliades, T., Pasquadibisceglie, A., D’Amelio, M., Alwan, S., Rossier, C., Dahl, H. H. M., Petersen, M. B., Estivill, X., Gasparini, P., Scott, H. S. and Antonarakis, S. E. (2002) ‘Mutations in the TMPRSS3 gene are a rare cause of childhood non-syndromic deafness in Caucasian patients’, Journal of molecular medicine, Vol. 80, pp. 124–131.   edoc
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